View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15748_low_12 (Length: 317)
Name: NF15748_low_12
Description: NF15748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15748_low_12 |
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| [»] scaffold0004 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 20001387 - 20001696
Alignment:
| Q |
1 |
ggttgagtgaactctgtctgtgtttctctgacactgaaggttgagtgaactgctacgatatttccggtctgaagataaagatactcgaagtagatattag |
100 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20001387 |
ggttgagtgaactccgtctttgtttctctgacactgaaggttgagtgaactgctacgatatttccggtctgaagataaacatactcgaagtagatattag |
20001486 |
T |
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| Q |
101 |
ctttatacaataattttaggacctttttattttacaatgaacacatctgcgacaagaaagattgtataagtcagataatataattgactctaattatatt |
200 |
Q |
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| T |
20001487 |
ctttatacaataattttaggacctttttattttacaatgaacacatctgcgacaagaaagattgtataagtcagataatataattgactctaattatatt |
20001586 |
T |
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| Q |
201 |
ttagtgattatcccctttatttcacatgttttggagttactgtttttagctcaatgttcattgttttattgagcaaccatcctaatgtagtagctttcgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
20001587 |
ttagtgattatcccctttatttcacatgttttggagttactgtttttagctcaatgttcattgttttattgagaaaccatcctaatgtagtagctctcgt |
20001686 |
T |
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| Q |
301 |
ttaacctttg |
310 |
Q |
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|||||||||| |
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| T |
20001687 |
ttaacctttg |
20001696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 342626 - 342491
Alignment:
| Q |
87 |
gaagtagatattagctttatacaataattttaggacctttttattttacaatgaacacatctg-cgacaagaaagattgtataagtcagataatataatt |
185 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || | |||| ||||||||||||||||||||| ||||| |
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| T |
342626 |
gaagtagatattagctttatacaa-----ttaggaccttttta-tttacaatgaacacatttgtagcaaagatagattgtataagtcagataatgtaatt |
342533 |
T |
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| Q |
186 |
gactcta---attatattttagtgattatcccctttatttca |
224 |
Q |
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| T |
342532 |
gactctaatcattctattttagtgattatccccttcatttca |
342491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 342490 - 342430
Alignment:
| Q |
246 |
ttagctcaatgttcattgttttattgagcaaccatcctaatgtagtagctttcgtttaacc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| |
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| T |
342490 |
ttagctcaatgttcattgttttattgagcaaccatcctaatgtaccagctctcatttaacc |
342430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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