View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15748_low_13 (Length: 308)
Name: NF15748_low_13
Description: NF15748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15748_low_13 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 295
Target Start/End: Original strand, 20001133 - 20001405
Alignment:
| Q |
23 |
atgaacatcatccataatttaaccataaaaaatttggattaaatcttaattttgtccttttgtatttacgattttgattcagcattcaatgatcttctaa |
122 |
Q |
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| T |
20001133 |
atgaacatcatctataatttaaccataaaaaatttggattaaatcttaattttgtccttttgtatttacgattttgattcagcattcgatgatcttctaa |
20001232 |
T |
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| Q |
123 |
tatggcttagccaactagaatttggttaatgccgaatttacacaaatgctgaaccaagatcatagaatgtcactcaggtaaacattatggcatagatgcc |
222 |
Q |
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| T |
20001233 |
tatggcttagccaactagaatttggttaatgccgaatttacacaaatgctgaaccaagatcatagaatgtcactcaggtaaacattatggcatagatgcc |
20001332 |
T |
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| Q |
223 |
ttgggacattggtgacttacataatcttaaagcaagtctttctccaacactgaaggttgagtgaactctgtct |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20001333 |
ttgggacattggtgacttacataatcttaaagcaagtctttctccaacactgaaggttgagtgaactccgtct |
20001405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 343082 - 342819
Alignment:
| Q |
29 |
atcatccataatttaaccataaa-aaatttggattaaatcttaattttgtccttttgtatttacgattttgattcagcattcaatgatcttctaatatg- |
126 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| | | | ||||||||||||||||| |||||| ||||||||||| |||| || |
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| T |
343082 |
atcatccataatttaaccataaatttttttggattaaatcttaatttttttcatctgtatttacgattttgaatcagca-tcaatgatcttgtaatgtga |
342984 |
T |
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| Q |
127 |
gcttagccaactagaatttggttaatgccgaatttacacaaatgctgaaccaagatcatagaatgtcactcaggtaaacattatggcatagatgccttgg |
226 |
Q |
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||||||||||| |||||||||||||||||| | | |||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| | |
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| T |
342983 |
gcttagccaacaagaatttggttaatgccgtagtgacacaaattctgaaccaagatcatagaatgtcaatcagctaaacattatggcatagatgccttag |
342884 |
T |
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| Q |
227 |
gacattggtgacttacataatcttaaagcaagtctttctccaacactgaaggttgagtgaactct |
291 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
342883 |
gacattggtgacttccataatcttaaagcaagtctttctccagcactgaaggttgaatgaactct |
342819 |
T |
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