View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15748_low_15 (Length: 278)
Name: NF15748_low_15
Description: NF15748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15748_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 56469338 - 56469588
Alignment:
| Q |
11 |
cagagaatgtaaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcacttccaaataaggcaaccccttcatttc |
110 |
Q |
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| T |
56469338 |
cagagaatgtaaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcacttccaaataaggcaaccccttcatttc |
56469437 |
T |
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| Q |
111 |
cactatttgatcataaacacctttgttaaaacaatctgccacagactttgagatgaggagaactaacatgaccaatggtagcatgaggaggttgttagta |
210 |
Q |
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| T |
56469438 |
cactatttgatcataaacacctttgttaaaacaatctgccacagactttgagatgaggagaactaacatgaccaatggtagcatgaggaggttgttagta |
56469537 |
T |
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| Q |
211 |
agttcgagaagtatgacacacaaagagacagtcattctcattgtgccacca |
261 |
Q |
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| T |
56469538 |
agttcgagaagaatgacacacaaagagacagtcattctcattgtgccacca |
56469588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 261
Target Start/End: Complemental strand, 155206 - 154966
Alignment:
| Q |
21 |
aaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcacttccaaataaggcaaccccttcatttccactatttga |
120 |
Q |
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| T |
155206 |
aaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgcttccatataaggtagtcccttcaacgccacaatctga |
155107 |
T |
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| Q |
121 |
tcataaacacctttgttaaaacaatctgccacagactttgagatgaggagaactaacatgaccaatggtagcatgaggaggttgttagtaagttcgagaa |
220 |
Q |
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| T |
155106 |
tcataaacacctttgttaaaacaatcagccactgtcttagaaatgaggagaaccaacatgaccaatggtagcatcaacaagttattagtgagttcaagaa |
155007 |
T |
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| Q |
221 |
gtatgacacacaaagagacagtcattctcattgtgccacca |
261 |
Q |
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| T |
155006 |
gtatgacacatagagaaactgtcattctcatcgtgccacca |
154966 |
T |
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