View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15748_low_19 (Length: 238)

Name: NF15748_low_19
Description: NF15748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15748_low_19
NF15748_low_19
[»] chr5 (13 HSPs)
chr5 (18-198)||(38182830-38183010)
chr5 (18-198)||(38188121-38188301)
chr5 (18-198)||(38210056-38210236)
chr5 (18-198)||(38169590-38169770)
chr5 (18-198)||(38443175-38443355)
chr5 (166-238)||(26029099-26029171)
chr5 (18-198)||(38183270-38183450)
chr5 (18-198)||(38185379-38185559)
chr5 (18-198)||(38212798-38212978)
chr5 (18-198)||(38214907-38215087)
chr5 (22-198)||(38215347-38215522)
chr5 (18-198)||(38453140-38453320)
chr5 (56-198)||(38197372-38197514)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 38182830 - 38183010
Alignment:
Q  18 gaagcaaacatcggaaaccttcaatgtagaaagctttaccatgagattagacaagttgatattacgatcaacggtgatgattttgttttcgccaccgatg 117  Q
    ||||||||||||||||| | | || || ||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||| || || |||||||||    
T  38182830 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatg 38182929  T
Q  118 tagaaatagtgacgatgatgataaagattggtaagcctaggttcaatttttccaccataactaatcaagagtttgactctc 198  Q
    ||| ||||  ||||||||| || ||||   |||||||||||||  ||||||||||||||  |||||| ||| |||||||||    
T  38182930 taggaataacgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctc 38183010  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 38188301 - 38188121
Alignment:
Q  18 gaagcaaacatcggaaaccttcaatgtagaaagctttaccatgagattagacaagttgatattacgatcaacggtgatgattttgttttcgccaccgatg 117  Q
    ||||||||||||||||| | | || || ||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||| || || |||||||||    
T  38188301 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatg 38188202  T
Q  118 tagaaatagtgacgatgatgataaagattggtaagcctaggttcaatttttccaccataactaatcaagagtttgactctc 198  Q
    ||| ||||  ||||||||| || ||||   |||||||||||||  ||||||||||||||  |||||| ||| |||||||||    
T  38188201 taggaataacgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctc 38188121  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 38210056 - 38210236
Alignment:
Q  18 gaagcaaacatcggaaaccttcaatgtagaaagctttaccatgagattagacaagttgatattacgatcaacggtgatgattttgttttcgccaccgatg 117  Q
    ||||||||||||||||| | | || || ||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||| || || |||||||||    
T  38210056 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatg 38210155  T
Q  118 tagaaatagtgacgatgatgataaagattggtaagcctaggttcaatttttccaccataactaatcaagagtttgactctc 198  Q
    ||| ||||  ||||||||| || ||||   |||||||||||||  ||||||||||||||  |||||| ||| |||||||||    
T  38210156 taggaataacgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctc 38210236  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 38169770 - 38169590
Alignment:
Q  18 gaagcaaacatcggaaaccttcaatgtagaaagctttaccatgagattagacaagttgatattacgatcaacggtgatgattttgttttcgccaccgatg 117  Q
    ||||||||||||||||| | | || || ||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||| || || |||||||||    
T  38169770 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatg 38169671  T
Q  118 tagaaatagtgacgatgatgataaagattggtaagcctaggttcaatttttccaccataactaatcaagagtttgactctc 198  Q
    ||| ||||  || |||||| || ||||   |||||||||||||  ||||||||||||||  |||||| ||| |||||||||    
T  38169670 taggaataacgaagatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctc 38169590  T

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Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 38443355 - 38443175
Alignment:
Q  18 gaagcaaacatcggaaaccttcaatgtagaaagctttaccatgagattagacaagttgatattacgatcaacggtgatgattttgttttcgccaccgatg 117  Q
    ||||||||||| ||||||| | ||||  ||||||||| ||||||| |  || ||||||||||||||||| |||||||||||||| || || |||||||||    
T  38443355 gaagcaaacattggaaaccatgaatgaggaaagctttgccatgaggtcggagaagttgatattacgatcgacggtgatgattttattgtctccaccgatg 38443256  T
Q  118 tagaaatagtgacgatgatgataaagattggtaagcctaggttcaatttttccaccataactaatcaagagtttgactctc 198  Q
    ||| ||||  ||||||||| || ||||   |||||||||||||  |||| |||||||||| |||||| ||| |||||||||    
T  38443255 taggaataacgacgatgatcatgaagagcagtaagcctaggttggatttctccaccataagtaatcatgagcttgactctc 38443175  T

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Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 26029099 - 26029171
Alignment:
Q  166 tttccaccataactaatcaagagtttgactctcgaaccgtttgggtactccatggaagaatttaaaagtgtgt 238  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26029099 tttccaccataactaaccatgagtttgactctcgaaccgtttgggtactccatggaagaatttaaaagtgtgt 26029171  T

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Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 38183450 - 38183270
Alignment:
Q  18 gaagcaaacatcggaaaccttcaatgtagaaagctttaccatgagattagacaagttgatattacgatcaacggtgatgattttgttttcgccaccgatg 117  Q
    ||||||||||||||||| | | || || ||||||||| ||||||| | | | ||||||||||||||||| ||| |||||||||| || || |||||||||    
T  38183450 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcaaagaagttgatattacgatcgacgatgatgattttattgtctccaccgatg 38183351  T
Q  118 tagaaatagtgacgatgatgataaagattggtaagcctaggttcaatttttccaccataactaatcaagagtttgactctc 198  Q
    ||| ||||  ||||||||| || ||||   |||||||||||||  ||||||||||||||  |||||| ||| |||||||||    
T  38183350 taggaataacgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctc 38183270  T

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Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 38185559 - 38185379
Alignment:
Q  18 gaagcaaacatcggaaaccttcaatgtagaaagctttaccatgagattagacaagttgatattacgatcaacggtgatgattttgttttcgccaccgatg 117  Q
    ||||||||||||||||| | | || || ||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||| || || || ||||||    
T  38185559 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccgccgatg 38185460  T
Q  118 tagaaatagtgacgatgatgataaagattggtaagcctaggttcaatttttccaccataactaatcaagagtttgactctc 198  Q
    ||| ||||  ||||||||| || ||||   |||||||||||||  |||||| |||||||  |||||| ||| |||||||||    
T  38185459 taggaataacgacgatgatcatgaagagaagtaagcctaggttggatttttgcaccataggtaatcatgagcttgactctc 38185379  T

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Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 38212798 - 38212978
Alignment:
Q  18 gaagcaaacatcggaaaccttcaatgtagaaagctttaccatgagattagacaagttgatattacgatcaacggtgatgattttgttttcgccaccgatg 117  Q
    ||||||||||||||||| | | || || ||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||| || || || ||||||    
T  38212798 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccgccgatg 38212897  T
Q  118 tagaaatagtgacgatgatgataaagattggtaagcctaggttcaatttttccaccataactaatcaagagtttgactctc 198  Q
    ||| ||||  ||||||||| || ||||   |||||||||||||  |||||| |||||||  |||||| ||| |||||||||    
T  38212898 taggaataacgacgatgatcatgaagagaagtaagcctaggttggatttttgcaccataggtaatcatgagcttgactctc 38212978  T

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Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 38214907 - 38215087
Alignment:
Q  18 gaagcaaacatcggaaaccttcaatgtagaaagctttaccatgagattagacaagttgatattacgatcaacggtgatgattttgttttcgccaccgatg 117  Q
    ||||||||||||||||| | | || || ||||||||| ||||||| | | | ||||||||||||||||| ||| |||||||||| || || |||||||||    
T  38214907 gaagcaaacatcggaaaacatgaacgtggaaagctttgccatgaggtcaaagaagttgatattacgatcgacgatgatgattttattgtctccaccgatg 38215006  T
Q  118 tagaaatagtgacgatgatgataaagattggtaagcctaggttcaatttttccaccataactaatcaagagtttgactctc 198  Q
    ||| ||||  ||||||||| || ||||   |||||||||||||  ||||||||||||||  |||||| ||| |||||||||    
T  38215007 taggaataacgacgatgatcatgaagagcagtaagcctaggttggatttttccaccataggtaatcatgagcttgactctc 38215087  T

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Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 38215522 - 38215347
Alignment:
Q  22 caaacatcggaaaccttcaatgtagaaagctttaccatgagattagacaagttgatattacgatcaacggtgatgattttgttttcgccaccgatgtaga 121  Q
    ||||||||||||| | | || || ||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||| || || ||||||||||||     
T  38215522 caaacatcggaaaacatgaacgtggaaagctttgccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtagg 38215423  T
Q  122 aatagtgacgatgatgataaagattggtaagcctaggttcaatttttccaccataactaatcaagagtttgactctc 198  Q
    ||||  ||||||||| || ||||   |||||||||||||  | ||||||||||||  |||||| ||| |||||||||    
T  38215422 aataacgacgatgatcatgaagagcagtaagcctaggttgga-ttttccaccataggtaatcatgagcttgactctc 38215347  T

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Target: chr5; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 38453140 - 38453320
Alignment:
Q  18 gaagcaaacatcggaaaccttcaatgtagaaagctttaccatgagattagacaagttgatattacgatcaacggtgatgattttgttttcgccaccgatg 117  Q
    ||||||||||||||||| | | ||| | ||||||||| ||||||| |  || ||||||||||||||||| |||||||||||||| || || || ||||||    
T  38453140 gaagcaaacatcggaaaacatgaatatggaaagctttgccatgaggtcggagaagttgatattacgatcgacggtgatgattttattgtctccgccgatg 38453239  T
Q  118 tagaaatagtgacgatgatgataaagattggtaagcctaggttcaatttttccaccataactaatcaagagtttgactctc 198  Q
    ||| ||||  ||||||||| || ||||   |||||||| ||||  ||||||||||||||  |||||| ||  |||||||||    
T  38453240 taggaataacgacgatgatcatgaagagaagtaagccttggttggatttttccaccataggtaatcatgaacttgactctc 38453320  T

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Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 38197372 - 38197514
Alignment:
Q  56 ccatgagattagacaagttgatattacgatcaacggtgatgattttgttttcgccaccgatgtagaaatagtgacgatgatgataaagattggtaagcct 155  Q
    ||||||| | ||| ||||||||||||||||| |||||||||||||| || || |||||||||||| ||||  || |||||| || ||||   ||||||||    
T  38197372 ccatgaggtcagagaagttgatattacgatcgacggtgatgattttattgtctccaccgatgtaggaataacgaagatgatcatgaagagcagtaagcct 38197471  T
Q  156 aggttcaatttttccaccataactaatcaagagtttgactctc 198  Q
    |||||  ||||||||||||||  |||||| ||| |||||||||    
T  38197472 aggttggatttttccaccataggtaatcatgagcttgactctc 38197514  T

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