View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15748_low_2 (Length: 548)
Name: NF15748_low_2
Description: NF15748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15748_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 225 - 538
Target Start/End: Original strand, 7432809 - 7433122
Alignment:
| Q |
225 |
ataatacactgcgatttgaaacgtgagttcaagctactttttattatataaaagttagttaaagtttttgtaacttttatgctattgcggccaaaatagc |
324 |
Q |
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| T |
7432809 |
ataatacactgcgatttgaaacgtgagttcaagctactttttattatataaaagttagttaaagtttttgtaacttttatgctattggggccaaaatagt |
7432908 |
T |
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| Q |
325 |
ggttgttgaagctgcacctgttttaagacctttaatttcatcctctttatcaattatcacaatgtaattgatattcaacacagattattttgagttatct |
424 |
Q |
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| T |
7432909 |
ggttgttgaagctgcacctgttttaagacctttaatttcatcctctttatcaattatcacaatgtaattgatattcaacacagattattttgagttatct |
7433008 |
T |
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| Q |
425 |
tggttttatatctagcacgaatccttgactgatttgaattcgactataagtttgtaaaacacagcccattaaacagtttcacatgtgagcatcgcgatta |
524 |
Q |
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| T |
7433009 |
tggttttatatcttgcacgaatccttgactgatttgaattcgactataagtttgtaaaccacagcccattaaacagtttcacatgtgagcatcgcgatta |
7433108 |
T |
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| Q |
525 |
agtcagtccctttg |
538 |
Q |
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| T |
7433109 |
agtcagtctctttg |
7433122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 7432635 - 7432800
Alignment:
| Q |
25 |
tgtacaaggaactgtggaatcaaaaatatcattttagattcactctagtctagtaagtagtaattcacgtatgctgaatgaatagtgtcactcaaattaa |
124 |
Q |
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| T |
7432635 |
tgtacaaggaactgtggaatcaaaaatatcattttagattcactatagtctagtaagtagtaattcacgtatgctgaatgaatagtgtcactcaaattaa |
7432734 |
T |
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| Q |
125 |
ttaataccttaaaatgcattggactgaaggttgagaccttgttttggcaagagaatgtagtccata |
190 |
Q |
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| T |
7432735 |
ttaataccttaaaatgcattggactgaaggttgagaccttgttttggcaagagaatgtagtccata |
7432800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 34560253 - 34560221
Alignment:
| Q |
158 |
agaccttgttttggcaagagaatgtagtccata |
190 |
Q |
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| T |
34560253 |
agaccttgttttggcaagagaacgtagtccata |
34560221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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