View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15748_low_4 (Length: 470)
Name: NF15748_low_4
Description: NF15748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15748_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 3043790 - 3043337
Alignment:
| Q |
1 |
caataataattcactctatttcatgttctcgtattacttccattttcaaaattgtaacaattacagtaagctatgattgcttaagcagcataatgcactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| | |
|
|
| T |
3043790 |
caataataattcactctatttcatgttctcgtattacttccattttcaaagttgtaacaattacagtaagctatgattgctttagcagcataatacacac |
3043691 |
T |
|
| Q |
101 |
tataagtgnnnnnnnncttcctataagaatatatcagcattgtgtgaattgaatttgaatgcatgaattcaaattattagtatttttcttcataatacaa |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3043690 |
tataagtgttttttttcttcctataagaatatatcagcattgtgtgaattgaatttgaatgcaggaattcaaattattagtatttttcttcataatacaa |
3043591 |
T |
|
| Q |
201 |
gaaaataaaaacctaagacttttaatatgttatggttaggataaacacatttaagtttaagaagaatacgaaaattatgctccattttttatggcatgca |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3043590 |
gaaaataaaaacttaagacttttaatatgttatggttaggataaacacatttaagtttaagaagaatacgaaaattatgctccattttttatggcatgca |
3043491 |
T |
|
| Q |
301 |
actatgtatgtgcagcaccccactcatgcttaagtttcaattttgcagatctgccctatatctgtatattagcactgttatctgtcaggtatatttctga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3043490 |
actatgtatgtgcagcaccccactcatgcttaagtttcaattttgcagatctgccctatatctgtatattagcactgttatctgtcaggtacatttctga |
3043391 |
T |
|
| Q |
401 |
ttttcccctcttattgtgaagcattgtataatcttcattatacttgtagtttgttttcat |
460 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
3043390 |
ttttcccctcttttaatgaag------ggaatcttcattatacttgtaatttgttttcat |
3043337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 403
Target Start/End: Complemental strand, 3015229 - 3015161
Alignment:
| Q |
335 |
tttcaattttgcagatctgccctatatctgtatattagcactgttatctgtcaggtatatttctgattt |
403 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||| | ||||| |||||| ||||||||||| |
|
|
| T |
3015229 |
tttcatttttgcagatcttccctatatctgtatattagcactatcatctgccaggtacatttctgattt |
3015161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University