View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15748_low_7 (Length: 412)
Name: NF15748_low_7
Description: NF15748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15748_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 8840174 - 8840584
Alignment:
| Q |
1 |
aagcttaaaatgtaaaaattaattagcaatcgtcatatttttctctgcaatgcgattattatgacgtttttagaggtctctgcaatcacatcgcaaccac |
100 |
Q |
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| T |
8840174 |
aagcttaaaatgtaaaaactaattagcaatcgtcatatttttctccgcaatgcgattattatgacgtttttagaggtctctgcaatcacattgcaaccac |
8840273 |
T |
|
| Q |
101 |
aattttagtcacatcaattgcatgcatgtgtctagaaacaaattctatacaagttttggaggcgtccgcaaccacattgcaatttttcgcaatgtcaaga |
200 |
Q |
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| T |
8840274 |
aattttagtcatatcaatagcatgcatgtgtctagaaacaaattctatacatgttttggaggcgtccgcaaccacattgcaatttttcgcgatgtcaaga |
8840373 |
T |
|
| Q |
201 |
atatttgacatacacaatttaaaatat-----------------ttgatatagttaaaacaagcatggcaatttgactcattataacatatataagcatt |
283 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| |
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| T |
8840374 |
atatttgacatgcacaatttaaaatatttgaccataacattctcttgatatagttaaatcaaacatgacaatttgactcattataacatatataagcatt |
8840473 |
T |
|
| Q |
284 |
actcacctagtgcaattgcactaacaagaattgtgaaggataaaacaaagataatcaaggaagctctttgaaagatattgacaagcttgtcaatgatttt |
383 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8840474 |
acttacctagtgcaattgcactaacaagaattgtgaaggataaaacaaagataatcaaggaagctctttgaaagatattgacaagcttgtcaatgatttt |
8840573 |
T |
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| Q |
384 |
ctgtcctatgt |
394 |
Q |
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||||||||||| |
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| T |
8840574 |
ctgtcctatgt |
8840584 |
T |
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