View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15749_high_12 (Length: 365)
Name: NF15749_high_12
Description: NF15749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15749_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 92 - 277
Target Start/End: Complemental strand, 30623628 - 30623443
Alignment:
| Q |
92 |
ttaatgtcatcaaatattaatgcatttatcattaaattaagtaagaaaaatagatataataaaagacatgacatttatggcgaaataaagagattgtagc |
191 |
Q |
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| T |
30623628 |
ttaacgtcatcaaatattaatacatttatcattaaattaactaagaaaaatagatataataaaagacatgacatttatgatgaaataaagagattgtagc |
30623529 |
T |
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| Q |
192 |
ggttgaataatgtgtgatatgatggtatatgggatagaaagacggaatgtgagaaagttatgggtgtttgttcgtttcgttgatgt |
277 |
Q |
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| T |
30623528 |
agttgaataatgtgtgatatgatggtatatgggatagaaagacggaatgtgagaaagttatgggtgtttgttcgtttcgttgatgt |
30623443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 30623393 - 30623355
Alignment:
| Q |
327 |
tctgacttctgaattctgataataaggtctgacatgagg |
365 |
Q |
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| T |
30623393 |
tctgacttctgaattctgataataaggtctgacatgagg |
30623355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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