View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15749_high_14 (Length: 356)
Name: NF15749_high_14
Description: NF15749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15749_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 30719743 - 30720031
Alignment:
| Q |
20 |
ggacatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgtt |
119 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
30719743 |
ggacatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtt |
30719842 |
T |
|
| Q |
120 |
gagtccatgattttgaatgatgaatttgaaggcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
219 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719843 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
30719942 |
T |
|
| Q |
220 |
tccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719943 |
tccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
30720031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 30881616 - 30881328
Alignment:
| Q |
20 |
ggacatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgtt |
119 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
30881616 |
ggacatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtt |
30881517 |
T |
|
| Q |
120 |
gagtccatgattttgaatgatgaatttgaaggcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
219 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881516 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
30881417 |
T |
|
| Q |
220 |
tccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881416 |
tccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
30881328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 66 - 308
Target Start/End: Complemental strand, 30892653 - 30892411
Alignment:
| Q |
66 |
atttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaggcatcatccataaga |
165 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
30892653 |
atttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtggagtccatgattttgaatgatgaatttgaaagcatcatccataaga |
30892554 |
T |
|
| Q |
166 |
ccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattcctt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30892553 |
ccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatggattcctt |
30892454 |
T |
|
| Q |
266 |
cggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30892453 |
cggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
30892411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 44731179 - 44731464
Alignment:
| Q |
20 |
ggacatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgtt |
119 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||||| ||||| |||||| |||| ||||| ||||||||||||||||| ||| |||||||| | |
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| T |
44731179 |
ggacatcttcatacccggtaatggtagctgcatgaatggacgctttgtttgcattgcatgttccgtcaacaccttgataagggtatgcggcttcagtact |
44731278 |
T |
|
| Q |
120 |
gagtccatgattttgaatgatgaatttgaaggcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
219 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44731279 |
aagtccgtgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacaccttttgtgtcacaatcaacaagttcttgt |
44731378 |
T |
|
| Q |
220 |
tccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctac |
305 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
44731379 |
tccgataaagagaccaactttccagtactcaacttagtaattccttcggttgctgcaacagctgaaaatgcccaacaacatcctac |
44731464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 16867566 - 16867854
Alignment:
| Q |
20 |
ggacatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgtt |
119 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||||| |||| ||||| |||| || || ||||||||||||||||| || | ||||| || || |
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| T |
16867566 |
ggacatcttcatacccagtaatggtaactgcattgatggatcctttgtttgcgttgcatgtcccgtcaacaccttgataagggtagttggcttcggtatt |
16867665 |
T |
|
| Q |
120 |
gagtccatgattttgaatgatgaatttgaaggcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||| |
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|
| T |
16867666 |
tagtccatgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacacctttcgtgtcacagtcaacgagttcttgt |
16867765 |
T |
|
| Q |
220 |
tccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
308 |
Q |
| |
|
|| |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
16867766 |
tctgataaagagatcaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
16867854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 308
Target Start/End: Complemental strand, 8899229 - 8898943
Alignment:
| Q |
22 |
acatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttga |
121 |
Q |
| |
|
||||| |||||||||||||| ||| ||| || |||||||||||||||||| | || |||||||||||||| ||||| || ||||||||||||||||||| |
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|
| T |
8899229 |
acatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgttga |
8899130 |
T |
|
| Q |
122 |
gtccatgattttgaatgatgaatttgaaggcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8899129 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
8899030 |
T |
|
| Q |
222 |
cgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
308 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
8899029 |
tgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
8898943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 74 - 308
Target Start/End: Complemental strand, 31727335 - 31727101
Alignment:
| Q |
74 |
tgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaggcatcatccataagaccaccctc |
173 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||| | ||||||| |||||| |||||||||| || ||||||||||||||||||||||| |
|
|
| T |
31727335 |
tgcatgttccatcaacaccttgataagggtattcagcttcagtgctaagtccattattttggatgatgaattcaaaagcatcatccataagaccaccctc |
31727236 |
T |
|
| Q |
174 |
acaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgcc |
273 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| || || || |||||||||||||||||||||||| |
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|
| T |
31727235 |
acaaccttggtcttcaccatttgtgtcacaatcaacaagttcttgttctgataaagagaccaaatttcctgtggtcaacttatgaattccttcggttgat |
31727136 |
T |
|
| Q |
274 |
gcaacagcagaaaatgcccaacaacatcctacaaa |
308 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| |
|
|
| T |
31727135 |
gcaaccgcagaaaacgcccaacaacatcctacaaa |
31727101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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