View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15749_high_2 (Length: 438)
Name: NF15749_high_2
Description: NF15749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15749_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 30 - 423
Target Start/End: Complemental strand, 38180768 - 38180375
Alignment:
| Q |
30 |
tcgtgctattgcattttcacaagccaccattaccatgacgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctc |
129 |
Q |
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| T |
38180768 |
tcgtgctattgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctc |
38180669 |
T |
|
| Q |
130 |
caattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcc |
229 |
Q |
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| T |
38180668 |
caattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatctcgggcc |
38180569 |
T |
|
| Q |
230 |
tttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacctacgagtatgagcttaagcgccgctgctc |
329 |
Q |
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| T |
38180568 |
tttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacctacgagtatgagcttaagcgccgctgctc |
38180469 |
T |
|
| Q |
330 |
ggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcatcattccttgggtcgcaaag |
423 |
Q |
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| T |
38180468 |
ggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcatcattccttgggtcgcaaag |
38180375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 5 - 423
Target Start/End: Complemental strand, 38185462 - 38185044
Alignment:
| Q |
5 |
caccacttatataagaacacttagctcgtgctattgcattttcacaagccaccattaccatgacgcaaaaccaccacttcctcatcatcacatacccact |
104 |
Q |
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| T |
38185462 |
caccacttatataagaacacttagcttgtgctattgcattttcacaagccaccattaccatggcgcaaaaccaccacttcctcatcatcacatacccact |
38185363 |
T |
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| Q |
105 |
acacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgcctt |
204 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
38185362 |
acacggtcacataaaccctgcactccaattcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatctacttacacactggcctt |
38185263 |
T |
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| Q |
205 |
accaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacctacg |
304 |
Q |
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| T |
38185262 |
atcaacaaaccaaccatcccaggcctctccttcgccaccttctctgatggctacgacgacggtaaaaatttcgaaagcaacgaagacttcatcgcctaca |
38185163 |
T |
|
| Q |
305 |
agtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcat |
404 |
Q |
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| T |
38185162 |
ggtccgagcttaagtgccactgctcagaatttctaacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgcttagcctacggtatcat |
38185063 |
T |
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| Q |
405 |
cattccttgggtcgcaaag |
423 |
Q |
| |
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||||||||||||||||||| |
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| T |
38185062 |
cattccttgggtcgcaaag |
38185044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 37 - 390
Target Start/End: Complemental strand, 38170947 - 38170594
Alignment:
| Q |
37 |
attgcattttcacaagccaccattaccatgacgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcg |
136 |
Q |
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||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
38170947 |
attgcattttcacaatccaccactaccatggcgcaaaaccaccacttcctcatcataacatacccactacaaggtcacataaaccctgccctccaattca |
38170848 |
T |
|
| Q |
137 |
ccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcctttcctt |
236 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||| ||||||| |||||||||||||||| ||||| |
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| T |
38170847 |
ccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatccacttatacagtcgccttatcaacaaaccaaccatcccgggcctctcctt |
38170748 |
T |
|
| Q |
237 |
cgccaccttctctgacggccacgacgatggcccaaaattcgaaagcaacgaagactttgtcacctacgagtatgagcttaagcgccgctgctcggaattt |
336 |
Q |
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||||||||||||||||||| | ||||| || | ||||| | || |||||||| | ||| ||||| || |||| ||| ||| ||| |||| |||||| |
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| T |
38170747 |
cgccaccttctctgacggctatgacgacggtcaaaaatcctttggcgacgaagacatcgtctcctacatgtctgagtttacgcgtcgcggctcagaattt |
38170648 |
T |
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| Q |
337 |
ctcacaaatatcatactctccggcaaacaggaaggtcgtccattcacttgctta |
390 |
Q |
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|||||||||||||| |||||| |||||| ||| || |||||||||||||||| |
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| T |
38170647 |
ctcacaaatatcattctctcctccaaacaagaaaatcatccattcacttgctta |
38170594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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