View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15749_high_3 (Length: 435)
Name: NF15749_high_3
Description: NF15749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15749_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 30 - 406
Target Start/End: Original strand, 35409716 - 35410092
Alignment:
| Q |
30 |
tcattgggaattaattttcgcattaattgtggccggattggaacatatccaccataggggtattgactgaagttcaagacagcatgttgcgctgatacag |
129 |
Q |
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| T |
35409716 |
tcattaggaattaattttcgcattaattgtggccggattggaacatatccaccataggggtattgactgaagttcaagacagcatgttgcgctgatacag |
35409815 |
T |
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| Q |
130 |
tccagataatggtggtaagcaaggagatgagatcctcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaa |
229 |
Q |
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| T |
35409816 |
tccagataatggtggtaagcaaggagatgagatcctcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaa |
35409915 |
T |
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| Q |
230 |
ttctttgtaccaggactggagttcattgtcagaagaaacggcatttaaatctttgtagtaatggttcacacaggtcctgaccaacttctctatactagtc |
329 |
Q |
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| T |
35409916 |
ttctttgtaccaggactggagttcattgtcagaagaaatggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagac |
35410015 |
T |
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| Q |
330 |
catatggggagtccatcagccgcataaggataatcttcagtaagtagtctaatgccatgtggctgagtggcatctgg |
406 |
Q |
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| T |
35410016 |
catatgaggagtccatcagccgcataaggataatcttcaataagtagtctaatgccatgtggccgagtggcatctgg |
35410092 |
T |
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