View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15749_high_4 (Length: 402)
Name: NF15749_high_4
Description: NF15749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15749_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 23 - 371
Target Start/End: Original strand, 44714617 - 44714965
Alignment:
| Q |
23 |
atcatcaccgctgatatgatcaaggacgagaataaatcccattgcaaaagcagcatcaaaaccaggcttaacacaaagagagaacacttccttcccaagc |
122 |
Q |
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| T |
44714617 |
atcatcaccgctgatatgatcaaggacgagaataaatcccattgcaaaagcagcatcaaaaccaggcttaacacaaagagagaacacttccttcccaagc |
44714716 |
T |
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| Q |
123 |
gtattacctgtagtggggtccactttacgataaatctcagccacaatttccttcatcgcgttaaaaactttgcaaccacgttgagagaaacacccttcga |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44714717 |
gtattacctgtagtggggtccactttacgataaatctcagccacaatttccttcatcgcgttaaaaactttgcaaccacgttgagagaaacacccttcga |
44714816 |
T |
|
| Q |
223 |
tatggtactcctcacctggattatcgtacacctccactgtcactcccgcacgtggtcgtccgatcattgatgatctcttcacgctgaaggttggtttatc |
322 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44714817 |
tatggtactcctcacctgggttatcgtacacctccactgtcactcccgcacgtggtcgtccgatcattgatgatctcttcacgctgaaggttggtttatc |
44714916 |
T |
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| Q |
323 |
accttccattttttcacctttaaagccttcccaccgttgatgcagactc |
371 |
Q |
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| T |
44714917 |
accttccattttttcacctttaaagccttcccaccgttgatgcagactc |
44714965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 25 - 371
Target Start/End: Original strand, 44703916 - 44704262
Alignment:
| Q |
25 |
catcaccgctgatatgatcaaggacgagaataaatcccattgcaaaagcagcatcaaaaccaggcttaacacaaagagagaacacttccttcccaagcgt |
124 |
Q |
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| T |
44703916 |
catcaccgttgatttgatcaaggacgagaacgaatcccatagcaaaggcagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcat |
44704015 |
T |
|
| Q |
125 |
attacctgtagtggggtccactttacgataaatctcagccacaatttccttcatcgcgttaaaaactttgcaaccacgttgagagaaacacccttcgata |
224 |
Q |
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| |||||| |||||||||||||| |||| ||||||||| || |||||||||| |||||||||| |||||| |||||||||||| || ||||| || |
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| T |
44704016 |
aacacctgtggtggggtccactttgcgatgaatctcagctacgttttccttcattccgttaaaaaccgtgcaacaacgttgagagaagcaaccttcaatg |
44704115 |
T |
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| Q |
225 |
tggtactcctcacctggattatcgtacacctccactgtcactcccgcacgtggtcgtccgatcattgatgatctcttcacgctgaaggttggtttatcac |
324 |
Q |
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|||||||||||||| || |||||||||||||||||||| ||||| | ||||| |||||||||||| ||||| |||||||| |||||||| |||||||||| |
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| T |
44704116 |
tggtactcctcaccagggttatcgtacacctccactgttactccagtacgtgctcgtccgatcatagatgacctcttcacactgaaggtaggtttatcac |
44704215 |
T |
|
| Q |
325 |
cttccattttttcacctttaaagccttcccaccgttgatgcagactc |
371 |
Q |
| |
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| || || ||||||||||||||||||||||||||||||| |||||| |
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| T |
44704216 |
cgtctcttctttcacctttaaagccttcccaccgttgatgtagactc |
44704262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 262
Target Start/End: Complemental strand, 2278242 - 2278056
Alignment:
| Q |
76 |
catcaaaaccaggcttaacacaaagagagaacacttccttcccaagcgtattacctgtagtggggtccactttacgataaatctcagccacaatttcctt |
175 |
Q |
| |
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|||||||| |||| | ||||||||| ||||||||| ||||||||| || || || |||||||||||||||||| |||||||||||| | || ||| |
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| T |
2278242 |
catcaaaatcaggttgaacacaaagcatgaacacttctttcccaagcataacactagtggtggggtccactttacgacgaatctcagccactaatttctt |
2278143 |
T |
|
| Q |
176 |
catcgcgttaaaaactttgcaaccacgttgagagaaacacccttcgatatggtactcctcacctggattatcgtacacctccactgt |
262 |
Q |
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| || ||||||| || || | | ||| | |||||||||||| || |||||||| ||||||| ||||||| ||||||||||| |
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| T |
2278142 |
tgtggcattaaaaatcttacagcatctttgtgggaaacacccttcaatgaggtactccacacctgggttatcgtgtacctccactgt |
2278056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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