View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15749_high_6 (Length: 388)
Name: NF15749_high_6
Description: NF15749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15749_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 32 - 341
Target Start/End: Complemental strand, 13021051 - 13020742
Alignment:
| Q |
32 |
gaaagggttaagtaacctgtatgtcttgtacttccttgcaagatcagtcatataatgatgaagcctgttgaagttcatcatctgattgaatacagtacca |
131 |
Q |
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| T |
13021051 |
gaaagggttaagtaacctgtatgtcttgtatttccttgcaagatcagtcatataatgatgaagtctgttgaagttcatcatctgattgaatacagtgcca |
13020952 |
T |
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| Q |
132 |
gcaacaggatgatacttcttcttcttcatactattgcttttgttgttcaattttctgaacagaaattgaactaccaaaaaagttaaacacgcagacaaag |
231 |
Q |
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| T |
13020951 |
gcaacaggatgatacttcttcttcttcatactattgcttttgttgttcaattttctgagcagaagttgaaccaacaaaagagttaaagatgcagacaaag |
13020852 |
T |
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| Q |
232 |
ctgaaaaaagataaggatttgatagaaaatccatgatggattggaatagcatggtggaggtggcgatggttttttgctttaaagaagaagttagtgttgc |
331 |
Q |
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| T |
13020851 |
ctgcaaaaagaagaggatttgatagaaaatccatgatggattggaatagcatggtggaggtggcgatggttttttgctttaaagaagaagttagtgttgc |
13020752 |
T |
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| Q |
332 |
tccagagtca |
341 |
Q |
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|||||||||| |
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| T |
13020751 |
tccagagtca |
13020742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 32 - 341
Target Start/End: Original strand, 13072792 - 13073101
Alignment:
| Q |
32 |
gaaagggttaagtaacctgtatgtcttgtacttccttgcaagatcagtcatataatgatgaagcctgttgaagttcatcatctgattgaatacagtacca |
131 |
Q |
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|||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |
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| T |
13072792 |
gaaagggttaagtagcctgtatgtcctgtatttccttgcaagatcagtcatataatgatgaagtctgttgaaattcatcatctgattgaatacagtgcca |
13072891 |
T |
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| Q |
132 |
gcaacaggatgatacttcttcttcttcatactattgcttttgttgttcaattttctgaacagaaattgaactaccaaaaaagttaaacacgcagacaaag |
231 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||||| | ||||| ||||||| | |||||||||| |
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| T |
13072892 |
gcaacaggatgatactttttcttcttcatgttattgcttttgttgttcaattttctgagcagaagttgaaccaacaaaagagttaaagatgcagacaaag |
13072991 |
T |
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| Q |
232 |
ctgaaaaaagataaggatttgatagaaaatccatgatggattggaatagcatggtggaggtggcgatggttttttgctttaaagaagaagttagtgttgc |
331 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
13072992 |
ctgcaaaaagaaaaggatttgatagaaaatccatgatggattggaatagcatggtggagatggcgatggttttttgctttaaagaagaagttagtgttac |
13073091 |
T |
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| Q |
332 |
tccagagtca |
341 |
Q |
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|||||||||| |
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| T |
13073092 |
tccagagtca |
13073101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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