View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1574_high_10 (Length: 372)
Name: NF1574_high_10
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 206 - 364
Target Start/End: Original strand, 8521397 - 8521563
Alignment:
| Q |
206 |
tatttttcctagctgagtggtttcatatttcatctcacaaattcttccacatcatatcttttacttattttatacggctta------taaatttttatga |
299 |
Q |
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| T |
8521397 |
tattttttctagctgagtggtttgatatttcatctcacaaattcttccacatcatatc-tttacttattttatgaggcttataaatttaaatttttatga |
8521495 |
T |
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| Q |
300 |
g---atttttccctagctcattgattggtctaatttttccctagctgattcgtttgatttttcatctc |
364 |
Q |
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| T |
8521496 |
gtttttttttccctagctcattgattggtctaatttttccctagctgattggtttgattttttatctc |
8521563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 8521148 - 8521282
Alignment:
| Q |
1 |
aactaaacaaactaatcatcaaaactaaataggaccgcaatggatgacaaaactatttctcttaaaatttattgtcga-tgcattgcgggaggtcattct |
99 |
Q |
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| T |
8521148 |
aactaaacaaactaatcatcaaaactaaataggaccgtaatggatgacaaaactatttctcttaagatttaatgtggattacattgtgggagatcattct |
8521247 |
T |
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| Q |
100 |
aataagcatcattcattttttgttcatccattacg |
134 |
Q |
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| T |
8521248 |
aacaagcatcattcatttttggttcatccattacg |
8521282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 8511651 - 8511703
Alignment:
| Q |
91 |
ggtcattctaataagcatcattcattttttgttcatccattacgtgataatga |
143 |
Q |
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| T |
8511651 |
ggtcattctaatatgcttcattcattttttgctcatccattacattataatga |
8511703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 8511809 - 8511882
Alignment:
| Q |
206 |
tatttttcctagctgagtggtttcatatttcatctcacaaattcttccacatcatatcttttacttattttatacg |
281 |
Q |
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| T |
8511809 |
tatttttactacctgattggttttatttttcatctcacaaatt-tttcacatcatatc-tatacttattttatacg |
8511882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 32522236 - 32522297
Alignment:
| Q |
92 |
gtcattctaataagcatcattcatttttt-gttcatccattacgtgataatgacttttttga |
152 |
Q |
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| T |
32522236 |
gtcattttaataagcatcgttcattttctagttcattcatcacgttataatgacttttttga |
32522297 |
T |
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