View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1574_high_11 (Length: 356)
Name: NF1574_high_11
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 44751057 - 44751406
Alignment:
| Q |
1 |
atcattgtaattaacgtgggtcatgatcaggtcattaattcctccccttccttcattatccaaatccaaaatcaacttgctattaagatttaagtggctc |
100 |
Q |
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| T |
44751057 |
atcattgtaattaacgtgggtcatgatcaggtcattaattcctccccttccttcattatccaaatccaaaatcaacttgctattaagatttaagtggctc |
44751156 |
T |
|
| Q |
101 |
cctcnnnnnnnnnnn-------gatttaagtggctattagttgtgtcttaactcttctgtgaattatagacaaataacctttcgtgcatgcaaggcaaca |
193 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44751157 |
cctcaaaaaaaaaaaaaattaagatttaagtggctattagttgtgtctta-ctcttctgtgaattatagacaaataacctttcgtgcatgcaaggcaaca |
44751255 |
T |
|
| Q |
194 |
aacttaaatccatatagttaggacatagagattgtatagaatttgatcaattattttgttcttattattnnnnnnnntagacttcgattcttaattttgg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44751256 |
aacttaaatccatatagttaggacatagagattgtatagaatttaatcaattattttgttcttattattaaaagaaatagacttcgattcttaattttgg |
44751355 |
T |
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| Q |
294 |
ctttgtacatgttttgacaaaacttaattttgttttatatcactggatatt |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44751356 |
ctttgtacatgttttgacaaaacttaattttgttttatatcactgaatatt |
44751406 |
T |
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