View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1574_high_12 (Length: 337)
Name: NF1574_high_12
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 7790994 - 7790689
Alignment:
| Q |
13 |
gagacactaagacaccaacaaagttcaaggctagcttatcataaactttttctatcatgaggaaatttcttttttgcttctactctatcatatttgatca |
112 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7790994 |
gagacactaagacaccaacaaagttcaaagctagctaatcataaactttttctatcatgaggaaatttcttttttgcttctactctatcatatttgatca |
7790895 |
T |
|
| Q |
113 |
acaaaagtt-aatatatttgattaaaaatttagattaga-atatcaaagaagttgtttatgtgatcgtgtagtgtttaaaatttaccttggttgccacgg |
210 |
Q |
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| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || |
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| T |
7790894 |
ataaaaatttaatatatttgattaaaaatttagattagatatatcaaagaagttgttcatgtgatcatgtagtgtttaaaatttaccttggttgccatgg |
7790795 |
T |
|
| Q |
211 |
tgactcctcatggtgtgtataagccaactgcacatcctccccaacctgcagtgacacagctgaagccttcctctccacaaaccttttcaaaagcaaattc |
310 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7790794 |
tgactcttcatggtgtgtataagccaactgcacatcctccccaacctgcagtgacacagctgaagccttcctctccacaaaccttttcaaaagcaaattc |
7790695 |
T |
|
| Q |
311 |
gccgtc |
316 |
Q |
| |
|
|||||| |
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|
| T |
7790694 |
gccgtc |
7790689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 20219518 - 20219555
Alignment:
| Q |
106 |
ttgatcaacaaaagttaatatatttgattaaaaattta |
143 |
Q |
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||||||||||||||||||||||||||||| |||||||| |
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| T |
20219518 |
ttgatcaacaaaagttaatatatttgattcaaaattta |
20219555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 14325894 - 14325934
Alignment:
| Q |
104 |
atttgatcaacaaaagttaatatatttgattaaaaatttag |
144 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||||||||| |
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|
| T |
14325894 |
atttgatcaacaaaaattaatgtatttgattcaaaatttag |
14325934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 26835314 - 26835282
Alignment:
| Q |
110 |
tcaacaaaagttaatatatttgattaaaaattt |
142 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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|
| T |
26835314 |
tcaacaaaagttaatatatttggttaaaaattt |
26835282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 55762948 - 55762916
Alignment:
| Q |
110 |
tcaacaaaagttaatatatttgattaaaaattt |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
55762948 |
tcaacaaaagttaatatatttgattaaaaattt |
55762916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 4479664 - 4479627
Alignment:
| Q |
106 |
ttgatcaacaaaagttaatatatttgattaaaaattta |
143 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
4479664 |
ttgatcaacaaaaattaatatatttgattcaaaattta |
4479627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 8777791 - 8777833
Alignment:
| Q |
106 |
ttgatcaacaaaagttaatatatttgattaaaaatttagatta |
148 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||| |
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|
| T |
8777791 |
ttgatcaacaaaagttaatatatttggttcaaaatttatatta |
8777833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 9238292 - 9238255
Alignment:
| Q |
106 |
ttgatcaacaaaagttaatatatttgattaaaaattta |
143 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
9238292 |
ttgatcaacaaaaattaatatatttgattcaaaattta |
9238255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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