View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1574_high_19 (Length: 250)
Name: NF1574_high_19
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 11444480 - 11444254
Alignment:
| Q |
6 |
agagagatgaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
11444480 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatc |
11444381 |
T |
|
| Q |
106 |
cttgattttgattagaacttgtttcacataagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactgaataatgttaat |
205 |
Q |
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||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11444380 |
cttaattttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactgaataatgttaat |
11444281 |
T |
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| Q |
206 |
taaggtgctatgttgtttggtattcat |
232 |
Q |
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| T |
11444280 |
taaggtgctatgttgtttggtattcat |
11444254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 11548628 - 11548854
Alignment:
| Q |
6 |
agagagatgaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
11548628 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatc |
11548727 |
T |
|
| Q |
106 |
cttgattttgattagaacttgtttcacataagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactgaataatgttaat |
205 |
Q |
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| T |
11548728 |
cttaattttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactgaataatgttaat |
11548827 |
T |
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| Q |
206 |
taaggtgctatgttgtttggtattcat |
232 |
Q |
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| T |
11548828 |
taaggtgctatgttgtttggtattcat |
11548854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 11441604 - 11441377
Alignment:
| Q |
6 |
agagagatgaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
105 |
Q |
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||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11441604 |
agagagaagaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatc |
11441505 |
T |
|
| Q |
106 |
cttgatttt-gattagaacttgtttcacataagttatgattaaaattcaataagtttgtactcataagtcaaattgatagtcacaactgaataatgttaa |
204 |
Q |
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||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
11441504 |
cttaatttttgattagaacttgtttcacttaagttatgattaaaattcaataagtttgtactcaaaagtcaaattgatagtcacaactgaatactgttaa |
11441405 |
T |
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| Q |
205 |
ttaaggtgctatgttgtttggtattcat |
232 |
Q |
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||||||||||||||||| |||||||||| |
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| T |
11441404 |
ttaaggtgctatgttgtatggtattcat |
11441377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 11508286 - 11508386
Alignment:
| Q |
6 |
agagagatgaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatc |
105 |
Q |
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|
||||||| |||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||| ||||| ||| |||||||||| |||| |
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| T |
11508286 |
agagagaagaaagaatgggagaaactcatattcgacgcaggtttcagcagctataagattacacctatatgcggtttcaagtctctcatcgaagtatatc |
11508385 |
T |
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| Q |
106 |
c |
106 |
Q |
| |
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| |
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| T |
11508386 |
c |
11508386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 11524509 - 11524636
Alignment:
| Q |
14 |
gaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatccttgattt |
113 |
Q |
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|||||||||| ||||||| || ||||| |||||||||||||| |||||| | || ||||| |||||||| ||| | || ||||||||||||| ||| |
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| T |
11524509 |
gaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatccttaattc |
11524608 |
T |
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| Q |
114 |
tgattagaacttgtttcacataagttat |
141 |
Q |
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| T |
11524609 |
taattagtagttgttgcaaataagttat |
11524636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 11487835 - 11487962
Alignment:
| Q |
14 |
gaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattgcacctatatgcggcttcaaatctatcatcgaagtttatccttgattt |
113 |
Q |
| |
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|||||||||| ||||||| || ||||| |||||||||||||| |||||| | || ||||| |||||||| || |||| ||||||||||| | |||| |
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| T |
11487835 |
gaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtcactcatagaagtttatccctaattt |
11487934 |
T |
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| Q |
114 |
tgattagaacttgtttcacataagttat |
141 |
Q |
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| ||||| | ||||| || |||| |||| |
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| T |
11487935 |
taattagtagttgttgcaaataacttat |
11487962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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