View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1574_high_5 (Length: 532)
Name: NF1574_high_5
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 7 - 513
Target Start/End: Original strand, 8284677 - 8285183
Alignment:
| Q |
7 |
tcgaagaatattggatactctaatgctaatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttc |
106 |
Q |
| |
|
||||| ||||| |||| ||| ||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| |
|
|
| T |
8284677 |
tcgaacaatatcggattctccaatgctaatgatgggatggtggtgttttctaattcacccgcagtctcggtgaaccaaaaccaagttgatgcttattttc |
8284776 |
T |
|
| Q |
107 |
gcatccctactgaaaccgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaagtagtgcctaatgccatgacacc |
206 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284777 |
aaacccctactggaaccgatttacaactacctacacccccatttttctctttccctgtgcagaatcatattaatgaagtagtgcctaatgccatgacacc |
8284876 |
T |
|
| Q |
207 |
accacataggtttaatcacttatctggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284877 |
accacataggtttaatcacttatctggtttcatgaactatggaagtgaaaatggaaactcctcaatggttcaacccttacctcaacagaatgttgatgta |
8284976 |
T |
|
| Q |
307 |
cctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8284977 |
cctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatcaagagaagattcaagaggaagcaa |
8285076 |
T |
|
| Q |
407 |
tgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8285077 |
tgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcc |
8285176 |
T |
|
| Q |
507 |
tcctact |
513 |
Q |
| |
|
||||||| |
|
|
| T |
8285177 |
tcctact |
8285183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 380 - 509
Target Start/End: Original strand, 34687150 - 34687276
Alignment:
| Q |
380 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatga |
479 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||| |||| |||||||||||| ||||||||||||| | ||||| ||||| |||||||| |
|
|
| T |
34687150 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatga |
34687249 |
T |
|
| Q |
480 |
tgagtcagttgatcttgctcctcttcctcc |
509 |
Q |
| |
|
| ||| ||||||||||||||| ||||| |
|
|
| T |
34687250 |
t---tcaactgatcttgctcctctacctcc |
34687276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 283 - 509
Target Start/End: Original strand, 34694979 - 34695205
Alignment:
| Q |
283 |
ttacctcaacagaatgttgatgtacctctagttaatcatgagatcaccatgaactatggaagtaaaagtggaattgcctcaatgaatcaccgatatgatc |
382 |
Q |
| |
|
||||||||| | ||||||||| | |||||| ||||| |||| | || |||||||||||||| |||| |||||| |||||| ||| ||| | ||||| |
|
|
| T |
34694979 |
ttacctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatc |
34695078 |
T |
|
| Q |
383 |
aagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatgatga |
482 |
Q |
| |
|
||||||| ||||||||||| | || ||||||| || ||| | || |||||||||||||||||||||||||| | ||| | ||||| ||||||||| | |
|
|
| T |
34695079 |
aagagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatca |
34695178 |
T |
|
| Q |
483 |
gtcagttgatcttgctcctcttcctcc |
509 |
Q |
| |
|
||| ||||||||||||||| ||||| |
|
|
| T |
34695179 |
ttcaactgatcttgctcctctccctcc |
34695205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 33 - 236
Target Start/End: Original strand, 34694753 - 34694959
Alignment:
| Q |
33 |
taatgatgggatggcggtgttttctaattcacccgcggtgtccgtgaaccaaaaccaagttgatgcttattttcgcatccctactgaaaccgatttacaa |
132 |
Q |
| |
|
|||||||||||||| | || | ||||||||||||| | || |||||||||| |||| |||| ||||| || || || |||| ||||| | ||||| |
|
|
| T |
34694753 |
taatgatgggatggtgatggtgcctaattcacccgcaatatctctgaaccaaaatcaagatgatacttatcctcacaccctcactggaaccggtctacaa |
34694852 |
T |
|
| Q |
133 |
ctacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgacaccaccacataggtttaatcacttat |
229 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||||||||| || ||||||| ||||| ||||| | | ||| | |||||||| |||| | |
|
|
| T |
34694853 |
ctacctacacccccattttcctctttcccggttgagaatcatattaataaaagggtagtgcttaatgacatgataacgccagaggggtttaattacttct |
34694952 |
T |
|
| Q |
230 |
ctggttt |
236 |
Q |
| |
|
||||||| |
|
|
| T |
34694953 |
ctggttt |
34694959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 34686910 - 34687001
Alignment:
| Q |
116 |
ctgaaaccgatttacaactacctacacccccatttttctctttccctgtggagaatcatattaatgaa---gtagtgcctaatgccatgaca |
204 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
34686910 |
ctgaaaccggtctacaactacctacacccccatttccctctttcccggttgagaatcatattaatgaaagggtagtgcttaatgacatgaca |
34687001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University