View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1574_high_6 (Length: 517)
Name: NF1574_high_6
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 26642603 - 26642172
Alignment:
| Q |
1 |
cggtggtattcgtagagtcgtcatacctccatcacttgggtatcagaacacatcacaggaacctatcccgcctaatgtaagaatccttttatgatccaga |
100 |
Q |
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| T |
26642603 |
cggtggtattcgtagagtcgtcatacctccatcacttgggtatcagaacacatcacaggaacctatcccacctaatgtaagaatccttttatgatccaga |
26642504 |
T |
|
| Q |
101 |
attatctagtaacgtttgattttatgcatatatacagtatacattacctaaattgataggttttttcatcacaaacacatgcgcgcgcacatatatatat |
200 |
Q |
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| T |
26642503 |
attacctagtaacgtttgattttatgcatatatacaatatacattatctaaattgataggttttttcatcacaaacacacgcgcgcgcac--acatatat |
26642406 |
T |
|
| Q |
201 |
tctctagttggagctaattatatacgtttgattgacgactatagtactaatttttaatgtcttctttcaaataaaataaaaaagttctttgacaggcaga |
300 |
Q |
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| T |
26642405 |
tctctagttggagctaattatatacgtttgattgaccactacagtactaatttttattgtattcttt----taaaa-aaaaaagttctttgacaggcaga |
26642311 |
T |
|
| Q |
301 |
ggctgttcactaccatttttaatccgactcgacttgcaaatggtgaaggttcaactttagggacacttatatttgatattgaactggttggcctgaggca |
400 |
Q |
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| T |
26642310 |
ggctgttcactaccatttttaatccgactcgacttgcaaatggtgaaggttcaactttagggacacttatatttgatattgaactggttggcttgaggca |
26642211 |
T |
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| Q |
401 |
tcagtgaattcagaatgatccagccatctacaaaacaaa |
439 |
Q |
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| T |
26642210 |
tcagtgaattcagaatgatccagcaatctagtaaacaaa |
26642172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 26642141 - 26642092
Alignment:
| Q |
446 |
atatagtgtaactgtacatgtaccagcatttattgatttgtgaattgcag |
495 |
Q |
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| T |
26642141 |
atatagtgtaactgtacatgtaccagcatttataaatttgtgaattgcag |
26642092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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