View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1574_high_7 (Length: 505)

Name: NF1574_high_7
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1574_high_7
NF1574_high_7
[»] chr8 (5 HSPs)
chr8 (1-422)||(2792368-2792777)
chr8 (21-259)||(44164761-44164997)
chr8 (413-488)||(2792922-2792997)
chr8 (21-223)||(17724434-17724628)
chr8 (276-326)||(33819687-33819737)
[»] chr3 (7 HSPs)
chr3 (51-259)||(30694341-30694549)
chr3 (21-231)||(33813073-33813283)
chr3 (51-231)||(46589584-46589764)
chr3 (14-79)||(45730497-45730562)
chr3 (61-258)||(45730303-45730493)
chr3 (276-332)||(5499427-5499483)
chr3 (276-343)||(9557320-9557387)
[»] chr1 (7 HSPs)
chr1 (1-231)||(10484607-10484836)
chr1 (51-259)||(27023963-27024171)
chr1 (14-94)||(19251511-19251591)
chr1 (276-343)||(51814494-51814561)
chr1 (275-333)||(14787355-14787413)
chr1 (96-190)||(19251402-19251495)
chr1 (276-332)||(34460929-34460985)
[»] chr5 (4 HSPs)
chr5 (21-229)||(5585834-5586042)
chr5 (58-160)||(11141171-11141273)
chr5 (1-155)||(25086112-25086273)
chr5 (1-155)||(25144082-25144243)
[»] scaffold0161 (2 HSPs)
scaffold0161 (14-268)||(26802-27067)
scaffold0161 (155-229)||(7764-7839)
[»] chr2 (13 HSPs)
chr2 (21-260)||(11502532-11502764)
chr2 (1-224)||(17909641-17909867)
chr2 (14-225)||(6095904-6096115)
chr2 (14-229)||(8207471-8207679)
chr2 (128-231)||(41075131-41075235)
chr2 (276-343)||(45672387-45672454)
chr2 (275-333)||(4438998-4439056)
chr2 (172-229)||(15253337-15253395)
chr2 (276-333)||(11738063-11738120)
chr2 (276-343)||(34041597-34041664)
chr2 (276-343)||(35916086-35916153)
chr2 (276-343)||(45672238-45672305)
chr2 (275-329)||(5147702-5147756)
[»] chr7 (2 HSPs)
chr7 (58-261)||(37381724-37381928)
chr7 (180-231)||(10024008-10024060)
[»] chr4 (7 HSPs)
chr4 (21-209)||(22209545-22209733)
chr4 (53-229)||(42935761-42935934)
chr4 (51-227)||(8191806-8191982)
chr4 (58-160)||(54421200-54421302)
chr4 (275-343)||(46545710-46545778)
chr4 (113-194)||(19878503-19878584)
chr4 (275-343)||(47044716-47044784)
[»] chr6 (3 HSPs)
chr6 (61-193)||(19403527-19403657)
chr6 (61-254)||(15107386-15107579)
chr6 (14-160)||(3622094-3622240)
[»] scaffold0105 (1 HSPs)
scaffold0105 (51-227)||(18381-18557)
[»] scaffold0118 (1 HSPs)
scaffold0118 (275-343)||(41642-41710)
[»] scaffold0013 (1 HSPs)
scaffold0013 (14-194)||(44342-44520)


Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 2792368 - 2792777
Alignment:
Q  1 tttattttgttgattccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2792368 tttattttgttgattccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttttaatt 2792467  T
Q  101 tgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatatgccact 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2792468 tgcttttttgatattgtgtatgtcgatcactctcaatcatcatttagtttgattgtttctacgagcttaattgtaactctaaaagtaataatatgccact 2792567  T
Q  201 ttaatacttatatatgaaactctacaaaaccagcgcatcacacggcttagagtctagttataataaaagcttgctaacccacttgagttggcctaatggt 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2792568 ttaatacttatatatgaaactctacaaaaccagcgcataacacgggttagagtctagttataataaaagcttgctaatccacttgagttggcctaatggt 2792667  T
Q  301 tttgacttgagatctgagagtatgttcctcctctagatctcagtccagatctcaggttcggttttctctggtgccaatttaaaagaaattgttatgtggt 400  Q
    ||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||| |||||||||||||||||||||||||||| ||    
T  2792668 tttgacttgagatctgagagtatgttcctcctct------------agatctcaggttcggttctctccggtgccaatttaaaagaaattgttatgtcgt 2792755  T
Q  401 aatagaaagaaccgccaagaat 422  Q
    ||||||||||||||||||||||    
T  2792756 aatagaaagaaccgccaagaat 2792777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 44164761 - 44164997
Alignment:
Q  21 tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta 120  Q
    |||||||| || |||  |||||||||||  ||||||||||||||||||||||| ||||||||| || | ||||| ||||||  |||||||| ||| || |    
T  44164761 tttgattattttcacataatttaatttatgactttgattccatattcatttttgttgatgcaaactga-tgtttttaatttt-ttttttgagattttgca 44164858  T
Q  121 tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaa 219  Q
    |||||| |||||||||||| ||  || |||||||||||||| ||  |||| ||||||||||||| ||||||||| |||||||| | | | | ||||||||    
T  44164859 tgtcgaccactctcaatcatcacatagtttgattgtttctatgactttaagtgtaactctaaaattaataatatagccactttga-aataacatatgaaa 44164957  T
Q  220 ctctacaaaaccagcgcatcacacggcttagagtctagtt 259  Q
    |||||||||||  |  ||||| |||| |||||||||||||    
T  44164958 ctctacaaaactcgtacatcatacgggttagagtctagtt 44164997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 413 - 488
Target Start/End: Original strand, 2792922 - 2792997
Alignment:
Q  413 cgccaagaatactcccaaggtgtaagtatatgcaaagaaaaattaaattgtagacccaccaaaattaaactcatat 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  2792922 cgccaagaatactcccaaggtgtaagtatatgcaaagaaaaattaaattgtagacccaccaccattaaactcatat 2792997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 17724628 - 17724434
Alignment:
Q  21 tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta 120  Q
    ||||||||||| |||  |||||||||||  ||||| ||||||||||||||||| ||||||||| |          | |||||||||||||| ||| || |    
T  17724628 tttgattactttcacataatttaatttatgactttaattccatattcatttttgttgatgcaaaca---------tcatttgcttttttgaaattttgca 17724538  T
Q  121 tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaa 219  Q
    |||| | |||||||||||| || ||| |||||||||||||| ||  || | ||| ||||||||| ||||||||| | || ||| ||||||||||||||||    
T  17724537 tgtctaccactctcaatcatcacttagtttgattgtttctatgactttgaatgtgactctaaaattaataatatagtcagttttatacttatatatgaaa 17724438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 326
Target Start/End: Original strand, 33819687 - 33819737
Alignment:
Q  276 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgtt 326  Q
    ||||||||| ||||| ||||||||| |||||||| ||||||||||| ||||    
T  33819687 aacccacttaagttgacctaatggtattgacttgggatctgagagtgtgtt 33819737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 51 - 259
Target Start/End: Complemental strand, 30694549 - 30694341
Alignment:
Q  51 actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt 150  Q
    ||||||||||||||||||||||||||||||||| |||||||||  |||||||||| ||||| ||||||||||||||||||| |||||   || ||| |||    
T  30694549 actttgattccatattcatttttattgatgcaaactaaatgttgttaatttgcttctttgagattgtgtatgtcgatcactttcaattgtcacttacttt 30694450  T
Q  151 gattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaaaaccagcgcatcacacggctt 248  Q
    || |||||||  ||| |||| |||||||||| |||||||||||| |||| ||| |||  |||||||||||||||||||||||| | ||||| ||||| ||    
T  30694449 gaatgtttct--gagtttaaatgtaactctacaagtaataatatagccaatttgatattttatatatgaaactctacaaaacccgtgcatcgcacgggtt 30694352  T
Q  249 agagtctagtt 259  Q
    |||||||||||    
T  30694351 agagtctagtt 30694341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 33813283 - 33813073
Alignment:
Q  21 tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta 120  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||||||||| ||||| ||| || ||| ||| ||||||  ||| |||| ||| || |    
T  33813283 tttgattactttcacaaaatttaatttatgactttgattccatattcatttttgttgatacaaact-aatatttttaatttattttgttgagattttgca 33813185  T
Q  121 tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaa 219  Q
    |||||| || |||||||||  | ||| |||||||||||||| ||  |||| ||||||||||||| ||||||||| |||||||||||||||| | || |||    
T  33813184 tgtcgaccattctcaatcattacttagtttgattgtttctatgactttaaatgtaactctaaaattaataatatagccactttaatacttacagataaaa 33813085  T
Q  220 ctctacaaaacc 231  Q
    ||||||||||||    
T  33813084 ctctacaaaacc 33813073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 46589764 - 46589584
Alignment:
Q  51 actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt 150  Q
    ||||||||| ||||||||||||| |||||||||  |||||||| ||||||||||| ||||| |||||| |||||||||| | |||||   || |||||||    
T  46589764 actttgatttcatattcatttttgttgatgcaaattaaatgttgctaatttgcttctttgagattgtgcatgtcgatcaatttcaattgtcacttaattt 46589665  T
Q  151 gattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaat-acttatatatgaaactctacaaaacc 231  Q
    ||||||||||  ||| ||||  ||||||||| || ||||||||| |||| ||| || | |||||||||||||| |||||||||    
T  46589664 gattgtttct--gagtttaaacgtaactctacaaataataatatagccaatttgataatttatatatgaaactgtacaaaacc 46589584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 45730562 - 45730497
Alignment:
Q  14 ttccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgat 79  Q
    ||||| ||||||||| |||||||||||||||||||  | |||||||||||||| |||||| |||||    
T  45730562 ttccagctttgattagttccactaaatttaatttatgattttgattccatatttatttttgttgat 45730497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 61 - 258
Target Start/End: Complemental strand, 45730493 - 45730303
Alignment:
Q  61 catattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttct 160  Q
    ||||||||||||| |||||| ||  |||||||   |||||||||| ||||| |||||| || ||||||||||||||||  |   || ||||||||||       
T  45730493 catattcatttttgttgatgtaaattaaatgtggttaatttgcttctttgagattgtgcatatcgatcactctcaatcgtcgcctagtttgattgtt--- 45730397  T
Q  161 acgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaaaaccagcgcatcacacggcttagagtctagt 258  Q
          |||| |||||||||| || |||||||||   || |||||||  |||||||||||||||||||||||| |||||||  |||| ||||||| ||||    
T  45730396 ------ttaaatgtaactctacaaataataatataatcaatttaatattttatatatgaaactctacaaaacccgcgcatcgaacgggttagagtatagt 45730303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 5499483 - 5499427
Alignment:
Q  276 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcct 332  Q
    |||||||||| ||||||||  |||| |||||||||||||||||||| || |||||||    
T  5499483 aacccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctcct 5499427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 343
Target Start/End: Original strand, 9557320 - 9557387
Alignment:
Q  276 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 343  Q
    |||||||||||| |||||| || || ||| |||| ||||||||||| || |||||||| |||||||||    
T  9557320 aacccacttgagctggcctgatagtattggcttgggatctgagagtgtgctcctcctcgagatctcag 9557387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10484607 - 10484836
Alignment:
Q  1 tttattttgttgattccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatt 100  Q
    |||||| ||||  |||||| ||||||||||| |||  |||||||||||  | ||||||||||||||||||||| ||||||||| |  |||||||||||||    
T  10484607 tttattgtgttatttccacgtttgattactttcacataatttaatttatgagtttgattccatattcatttttgttgatgcaaacagaatgtttctaatt 10484706  T
Q  101 tgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccac 199  Q
    | ||||||||| ||| ||||||| || ||||||||||||  ||||| |||||||||||||| ||  |  | ||||||| ||||| ||||||||| | ||     
T  10484707 ttcttttttgagattttgtatgttga-cactctcaatca-tatttagtttgattgtttctatgacttcgaatgtaactataaaattaataatatagtcag 10484804  T
Q  200 tttaatacttatatatgaaactctacaaaacc 231  Q
    ||| ||||||||||||||||||||||||||||    
T  10484805 tttgatacttatatatgaaactctacaaaacc 10484836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 51 - 259
Target Start/End: Complemental strand, 27024171 - 27023963
Alignment:
Q  51 actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt 150  Q
    ||||||||||||||||||||||| || |||||| |||||||||  |||||||||| ||||| |||||| |||||||||||| |||||   || ||| |||    
T  27024171 actttgattccatattcatttttgtttatgcaaactaaatgttgttaatttgcttctttgagattgtgcatgtcgatcactttcaattgtcacttagttt 27024072  T
Q  151 gattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaaaaccagcgcatcacacggctt 248  Q
    |||||||| |  ||| |||| |||||||||| | |||||||||| |||| ||| |||  |||||||||||||||| ||||||| | ||||| || || ||    
T  27024071 gattgttttt--gagtttaaatgtaactctacacgtaataatatagccaatttgatattttatatatgaaactctccaaaacccgtgcatcgcaagggtt 27023974  T
Q  249 agagtctagtt 259  Q
    | |||||||||    
T  27023973 aaagtctagtt 27023963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 19251591 - 19251511
Alignment:
Q  14 ttccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt 94  Q
    |||||| ||||||||||| |||  |||||| |||| || ||||||||||||||||||||| ||||||||| | ||||||||    
T  19251591 ttccacatttgattactttcacagaatttagtttataagtttgattccatattcatttttgttgatgcaaacaaaatgttt 19251511  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 343
Target Start/End: Original strand, 51814494 - 51814561
Alignment:
Q  276 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 343  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||| || |||||||| || ||||||    
T  51814494 aacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcag 51814561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 14787413 - 14787355
Alignment:
Q  275 taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctc 333  Q
    |||| ||||||||||| |||| |||| ||||||||||| |||||||| |||| ||||||    
T  14787413 taactcacttgagttgacctagtggtattgacttgagacctgagagtgtgtttctcctc 14787355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 19251495 - 19251402
Alignment:
Q  96 taatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaata 190  Q
    |||||| ||||||| | ||| || ||||||| |||||||||||| || ||| |||||||||||||| ||  || | ||||||||||||| |||||    
T  19251495 taattttcttttttaagattttgcatgtcga-cactctcaatcatcacttagtttgattgtttctatgactttgaatgtaactctaaaattaata 19251402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 34460985 - 34460929
Alignment:
Q  276 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcct 332  Q
    ||||||||||||||||| || |||| ||||||||||| || | ||| ||||||||||    
T  34460985 aacccacttgagttggcttagtggtattgacttgagacctaaaagtgtgttcctcct 34460929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 5586042 - 5585834
Alignment:
Q  21 tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta 120  Q
    ||||||||||| |||  |||||| ||||  | |||||||| |||||||||||| ||||||||| | ||||||||||||||| ||||||||| ||| ||||    
T  5586042 tttgattactttcacagaatttagtttatgagtttgattctatattcatttttgttgatgcaaacaaaatgtttctaattttcttttttgagattttgta 5585943  T
Q  121 tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaa 219  Q
    ||| ||| ||||||||||| || ||| |||||||||| ||| ||  ||   ||||||||||||| ||||||||| |  | ||||||||||||||||||||    
T  5585942 tgttgat-actctcaatcatcacttagtttgattgttactatgactttggatgtaactctaaaattaataatatagttagtttaatacttatatatgaaa 5585844  T
Q  220 ctctacaaaa 229  Q
    ||||||||||    
T  5585843 ctctacaaaa 5585834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 11141171 - 11141273
Alignment:
Q  58 ttccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtt 157  Q
    |||||||||||||||| ||||||||| |||||||||  |||||| ||| | ||| |||||| ||||||||||||||||||   || ||||||||||||||    
T  11141171 ttccatattcatttttgttgatgcaaactaaatgttgttaatttacttctatgaaattgtgcatgtcgatcactctcaattgtcacttaatttgattgtt 11141270  T
Q  158 tct 160  Q
    |||    
T  11141271 tct 11141273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 25086112 - 25086273
Alignment:
Q  1 tttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtt-----t 94  Q
    |||||| |||||||| ||||| || ||| |||||||| ||||||||| |  || ||| |||||||||||||||| |||||||||  | | ||||     |    
T  25086112 tttattgtgttgatttccacccttcattgcttccactgaatttaattcatgacgttgtttccatattcatttttgttgatgcaaattgagtgttgttgat 25086211  T
Q  95 ctaatttgctttttt-gatattgtgtatgtcgatcactctcaatcaccatttaatttgattg 155  Q
    || || ||||||||| || |||||| |||||||||||||||||||| |||||| ||||||||    
T  25086212 ctgatctgctttttttgagattgtgcatgtcgatcactctcaatcatcatttagtttgattg 25086273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 25144082 - 25144243
Alignment:
Q  1 tttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtt-----t 94  Q
    |||||| |||||||| ||||| || ||| |||||||| ||||||||| |  || ||| |||||||||||||||| |||||||||  | | ||||     |    
T  25144082 tttattgtgttgatttccacccttcattgcttccactgaatttaattcatgacgttgtttccatattcatttttgttgatgcaaattgagtgttgttgat 25144181  T
Q  95 ctaatttgctttttt-gatattgtgtatgtcgatcactctcaatcaccatttaatttgattg 155  Q
    || || ||||||||| || |||||| |||||||||||||||||||| |||||| ||||||||    
T  25144182 ctgatctgctttttttgagattgtgcatgtcgatcactctcaatcatcatttagtttgattg 25144243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 27067 - 26802
Alignment:
Q  14 ttccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgata 113  Q
    ||||||||||||||| ||||||||||||||||| |  | | ||||| ||||||||||||| || ||| || || |||||||||||||||  | ||| | |    
T  27067 ttccacctttgattatttccactaaatttaattaatgattatgatttcatattcatttttgttaatgtaaactgaatgtttctaatttgtctctttaaga 26968  T
Q  114 ttgtgtatgtcgatcactctcaatcac----------catttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatatg-ccacttt 202  Q
    ||||| |||||||||||||||||||||          ||  || |||||| ||||||| ||| |||| | |||| ||||||||||||||||  ||| |||    
T  26967 ttgtgcatgtcgatcactctcaatcactctcaatcatcacctagtttgatcgtttctatgagtttaaatataacactaaaagtaataatataaccaattt 26868  T
Q  203 aatacttatatatgaaactctacaaaaccagcgcatcacacggcttagagtctagttataataaaa 268  Q
    ||||||||||||||||||||| ||||| | | | |||||| || |||||||||||||||| |||||    
T  26867 aatacttatatatgaaactctgcaaaatccgtgtatcacatggattagagtctagttatattaaaa 26802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 7839 - 7764
Alignment:
Q  155 gtttctacgagcttaattgtaactctaaaagtaataatatg-ccactttaatacttatatatgaaactctacaaaa 229  Q
    ||||||| ||| |||| | |||| ||||||||||||||||  ||| |||||||||||||||||||| |||||||||    
T  7839 gtttctatgagtttaaatataaccctaaaagtaataatataaccaatttaatacttatatatgaaattctacaaaa 7764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 11502532 - 11502764
Alignment:
Q  21 tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta 120  Q
    ||||||||||| |||  |||||||||||  ||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||| ||| || |    
T  11502532 tttgattactttcacataatttaatttatgactttgattccatattcatttttgttgatgcaaact-aatgtttctaatttgcttttttgagattttgca 11502630  T
Q  121 tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaa 219  Q
           | |||||||||| ||  || |||||||||||||| ||  || | ||||||||||||| ||||||| | |||||||| ||||||||||||||||    
T  11502631 -------ccctctcaatcatcacatagtttgattgtttctatgactttgaatgtaactctaaaattaataatgtagccactttgatacttatatatgaaa 11502723  T
Q  220 ctctacaaaaccagcgcatcacacggcttagagtctagtta 260  Q
    |||||| ||||| |  |||   |||| ||||||||||||||    
T  11502724 ctctacgaaacccgtacatagtacgggttagagtctagtta 11502764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 17909641 - 17909867
Alignment:
Q  1 tttattttgttgattc-cacctttgattacttccactaaatttaatttacaactttgatt-ccatattcatttttattgatgcaagctaaatgtttctaa 98  Q
    |||||| ||||||||  ||||||| ||||||| |||| |||||||||||  ||||||||| |||||||||||||| |||||||||  | ||| || || |    
T  17909641 tttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgatttccatattcatttttgttgatgcaaattgaatattgctca 17909740  T
Q  99 tttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataata-tgcc 197  Q
    | |||||||||||  ||||  || ||||||||||| ||||| || ||| ||| ||||||| || ||| || | ||||||||||||||||||||||   ||    
T  17909741 tctgcttttttgaggttgttcatatcgatcactcttaatcatcacttagtttaattgtttttatgagtttgaatgtaactctaaaagtaataatacaacc 17909840  T
Q  198 actttaatacttatatatgaaactcta 224  Q
    | |||||||||||||||||||| ||||    
T  17909841 aatttaatacttatatatgaaaatcta 17909867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 6095904 - 6096115
Alignment:
Q  14 ttccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgata 113  Q
    |||||| ||||||||||| |||  |||||| ||||  | |||||||||||||| |||||| |||||||||    ||||||| ||| || ||||||||| |    
T  6095904 ttccacgtttgattactttcacataatttagtttatgagtttgattccatatttatttttgttgatgcaaagagaatgtttttaactttcttttttgaga 6096003  T
Q  114 ttgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttata 212  Q
    || || ||||| || ||||||||||| || ||| ||||||| |||| | ||  || | ||||||||||||| ||||||||| | || ||| |||||||||    
T  6096004 ttttgcatgtcaat-actctcaatcatcacttagtttgattatttccatgactttgaatgtaactctaaaattaataatatagtcattttcatacttata 6096102  T
Q  213 tatgaaactctac 225  Q
    ||||||| |||||    
T  6096103 tatgaaaatctac 6096115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 8207679 - 8207471
Alignment:
Q  14 ttccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgata 113  Q
    |||||| ||||||||||| |||  |||||| ||||  | |||| || ||||| ||||||| || |||||| | ||||||||||||||| ||||||||| |    
T  8207679 ttccacgtttgattactttcacataatttagtttatgagtttggtttcatatgcatttttttt-atgcaaacaaaatgtttctaattttcttttttgaga 8207581  T
Q  114 ttgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttata 212  Q
    || ||||||| |  ||||||||||||  | ||||||||||||| |||| || ||||    ||||||||||| |||||||||   || ||| |||||||||    
T  8207580 ttttgtatgttg-gcactctcaatca-tacttaatttgattgtgtctatga-ctta----taactctaaaattaataatataatcagtttgatacttata 8207488  T
Q  213 tatgaaactctacaaaa 229  Q
    ||||||||| |||||||    
T  8207487 tatgaaactttacaaaa 8207471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 41075235 - 41075131
Alignment:
Q  128 cactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaactctaca 226  Q
    |||||||||||| || ||| |||||||||||||| ||  || | ||||||||||||  ||||||||| | || ||| |||||||||||||||| ||||||    
T  41075235 cactctcaatcatcacttagtttgattgtttctatgactttgaatgtaactctaaagttaataatatagtcagtttgatacttatatatgaaattctaca 41075136  T
Q  227 aaacc 231  Q
    |||||    
T  41075135 aaacc 41075131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 45672454 - 45672387
Alignment:
Q  276 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 343  Q
    |||||||||| ||||||||  |||||||| ||||||| ||  ||||||||||||||||||| ||||||    
T  45672454 aacccacttgggttggccttgtggttttgccttgagaccttggagtatgttcctcctctaggtctcag 45672387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 4439056 - 4438998
Alignment:
Q  275 taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctc 333  Q
    ||||||||||| |||||||||||||| || ||||| ||||||||||| || ||||||||    
T  4439056 taacccacttgggttggcctaatggtattaacttgggatctgagagtgtgctcctcctc 4438998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 15253395 - 15253337
Alignment:
Q  172 tgtaactctaaaagtaataatatgc-cactttaatacttatatatgaaactctacaaaa 229  Q
    ||||| ||||||| ||||||||||  || ||||||||||||||||||||||||||||||    
T  15253395 tgtaattctaaaattaataatatggtcattttaatacttatatatgaaactctacaaaa 15253337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 11738120 - 11738063
Alignment:
Q  276 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctc 333  Q
    ||||||||||||||||  || |||| |||||| ||||||||||||| |||||||||||    
T  11738120 aacccacttgagttggattagtggtattgactagagatctgagagtgtgttcctcctc 11738063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 34041664 - 34041597
Alignment:
Q  276 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 343  Q
    |||||||||| ||||||||| |||| |||||||  ||||||||||| || |||||||| || ||||||    
T  34041664 aacccacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcag 34041597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 343
Target Start/End: Original strand, 35916086 - 35916153
Alignment:
Q  276 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 343  Q
    |||||||||| ||||| ||  |||| |||||||||||| | ||||| ||||||||||| |||||||||    
T  35916086 aacccacttgggttggtctggtggtattgacttgagatttaagagtgtgttcctcctcaagatctcag 35916153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 45672305 - 45672238
Alignment:
Q  276 aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 343  Q
    ||||||||||  |||||||  |||||||| ||||||| ||  ||||||||||||||||||| ||||||    
T  45672305 aacccacttggattggccttgtggttttgccttgagaccttggagtatgttcctcctctaggtctcag 45672238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 5147756 - 5147702
Alignment:
Q  275 taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcct 329  Q
    ||||||||||| ||||| ||| |||| ||||||||||||||| ||||||| ||||    
T  5147756 taacccacttgggttggtctagtggtattgacttgagatctgggagtatgctcct 5147702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 58 - 261
Target Start/End: Original strand, 37381724 - 37381928
Alignment:
Q  58 ttccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtt 157  Q
    |||||||||||||||| ||||||||| |||||||||  |||||||||| ||||| ||||||||| |||||||||||||||   || ||||||||||||||    
T  37381724 ttccatattcatttttgttgatgcaaactaaatgttgttaatttgcttctttgagattgtgtatatcgatcactctcaattgtcacttaatttgattgtt 37381823  T
Q  158 tctacgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaaaacca-gcgcatcacacggcttagagtc 254  Q
    |||  ||| |||| ||||||||||  | ||||||||| | || ||| |||  |||||||||||||||||||||| || | ||||| ||||| | ||||||    
T  37381824 tct--gagtttaaatgtaactctacgattaataatatagtcaatttgatattttatatatgaaactctacaaaaacacgtgcatcgcacgggtcagagtc 37381921  T
Q  255 tagttat 261  Q
    |||||||    
T  37381922 tagttat 37381928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 10024060 - 10024008
Alignment:
Q  180 taaaagtaataatat-gccactttaatacttatatatgaaactctacaaaacc 231  Q
    ||||||||||||||| | || ||| ||| ||||||||||||||||||||||||    
T  10024060 taaaagtaataatatagtcaatttcatagttatatatgaaactctacaaaacc 10024008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 22209545 - 22209733
Alignment:
Q  21 tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta 120  Q
    ||||||||||| |||  |||||||||||  | |||||||| |||||||||||| ||||||||| |||| | ||| |||||||||||||||| ||| || |    
T  22209545 tttgattactttcacataatttaatttatgaatttgattcgatattcatttttgttgatgcaaactaa-tatttttaatttgcttttttgagattttgca 22209643  T
Q  121 tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatactt 209  Q
    |||||| |||||||||||| || ||| ||||||||||| ||  |  |||| | ||||||||||| ||||||||| |||||||||| ||||    
T  22209644 tgtcgaccactctcaatcatcacttagtttgattgtttttatcactttaaatataactctaaaattaataatatagccactttaacactt 22209733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 42935761 - 42935934
Alignment:
Q  53 tttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttga 152  Q
    |||| |||||||| ||||||| |  |||||| | ||||||||||||||| ||||||||| ||| ||||||| |  ||||||||||||  | |||||||||    
T  42935761 tttggttccatatgcattttttt--atgcaaacaaaatgtttctaattttcttttttgagattttgtatgttg-gcactctcaatca-tacttaatttga 42935856  T
Q  153 ttgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaactctacaaaa 229  Q
    |||| |||| ||  |||| | ||||||||||| ||||||||| | || ||| |||||||||||||||||| |||||||    
T  42935857 ttgtgtctatgactttaaatataactctaaaattaataatatagtcagtttgatacttatatatgaaactttacaaaa 42935934  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 8191982 - 8191806
Alignment:
Q  51 actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt 150  Q
    ||||||||||||||||||||||| || |||||| |||||||||| ||| || ||| ||| | |||||| |||||||||| |||||||   || ||| |||    
T  8191982 actttgattccatattcatttttgttaatgcaaactaaatgtttttaactttcttctttaaaattgtgcatgtcgatcattctcaattgtcacttagttt 8191883  T
Q  151 gattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaa 227  Q
     ||||||| |  ||| ||||  ||||||||| || ||||||||| | || |||||||  ||||| ||||||||||||||    
T  8191882 aattgttttt--gagtttaaaagtaactctataaataataatatagtcaatttaatattttatacatgaaactctacaa 8191806  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 54421200 - 54421302
Alignment:
Q  58 ttccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtt 157  Q
    |||||||||||||||| |||||| || |||||||||  || ||||||| ||||| |||||| |||||||| |||||||||   || ||| ||||||||||    
T  54421200 ttccatattcatttttgttgatgtaaactaaatgttgttactttgcttctttgagattgtgcatgtcgataactctcaattgtcacttagtttgattgtt 54421299  T
Q  158 tct 160  Q
    |||    
T  54421300 tct 54421302  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 46545710 - 46545778
Alignment:
Q  275 taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 343  Q
    ||||||||||| ||||||||| |||| ||| ||||||| |||||||| || |||||||| |||||||||    
T  46545710 taacccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcag 46545778  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 19878503 - 19878584
Alignment:
Q  113 attgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat 194  Q
    |||||| |||||||||||||||||||| || ||| ||||||  |||||| ||| || | ||||||| |||  ||||||||||    
T  19878503 attgtgcatgtcgatcactctcaatcatcacttagtttgataatttctatgagtttgaatgtaactttaagggtaataatat 19878584  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 47044716 - 47044784
Alignment:
Q  275 taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 343  Q
    |||||||||||  |||||||  |||| |||||||| ||||||||||| || |||||||| || ||||||    
T  47044716 taacccacttggattggcctggtggtattgacttgggatctgagagtttgctcctcctcgaggtctcag 47044784  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 61 - 193
Target Start/End: Original strand, 19403527 - 19403657
Alignment:
Q  61 catattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttct 160  Q
    |||||| |||||| ||||||| | |||||||||  |||||||||| ||||| |||||| ||||| ||||||||||||   || ||| |||||||||||||    
T  19403527 catattaatttttgttgatgctaactaaatgttgttaatttgcttctttgagattgtgcatgtcaatcactctcaattgtcacttagtttgattgtttct 19403626  T
Q  161 acgagcttaattgtaactctaaaagtaataata 193  Q
      ||| |||| |||||||||| || ||||||||    
T  19403627 --gagtttaaatgtaactctacaattaataata 19403657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 254
Target Start/End: Complemental strand, 15107579 - 15107386
Alignment:
Q  61 catattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttct 160  Q
    |||||||||| || ||||||||  |||||||||  |||||||||| ||||| |||||| |||||||||| |||||||   || ||| |||||||||||||    
T  15107579 catattcattattgttgatgcagactaaatgttgttaatttgcttctttgagattgtgcatgtcgatcattctcaattgtcacttagtttgattgtttct 15107480  T
Q  161 acgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaaaaccagcgcatcacacggcttagagtc 254  Q
      ||| |||| ||||||||||  | ||||||||| |||| ||| |||  |||| |||||||||||| |||| | | ||||| || || ||||||||    
T  15107479 --gagtttaaatgtaactctacgattaataatatagccaatttgatattttatttatgaaactctaaaaaatccgtgcatctcatgggttagagtc 15107386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 3622094 - 3622240
Alignment:
Q  14 ttccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaa-tttgcttttttgat 112  Q
    |||||||||||||||||| ||| |||| || ||||  | ||||||||| |||| |||||| |||||||||   |||| ||| ||| |||  ||||||||     
T  3622094 ttccacctttgattactttcacaaaatgtagtttatgagtttgattccgtatttatttttgttgatgcaaatgaaatttttttaattttttttttttgag 3622193  T
Q  113 attgtgtatgtcgatcactctcaatcaccatttaatttgattgtttct 160  Q
    ||| || |||||||| |||||||||||  | ||| |||||||||||||    
T  3622194 attttgcatgtcgat-actctcaatcattagttagtttgattgtttct 3622240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 51 - 227
Target Start/End: Complemental strand, 18557 - 18381
Alignment:
Q  51 actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt 150  Q
    ||||||||||||||||||||||| || |||||| |||||||||| ||| || ||| ||| | |||||| |||||||||| |||||||   || ||| |||    
T  18557 actttgattccatattcatttttgttaatgcaaactaaatgtttttaactttcttctttaaaattgtgcatgtcgatcattctcaattgtcacttagttt 18458  T
Q  151 gattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaa 227  Q
     ||||||| |  ||| ||||  ||||||||| || ||||||||| | || |||||||  ||||| ||||||||||||||    
T  18457 aattgttttt--gagtttaaaagtaactctataaataataatatagtcaatttaatattttatacatgaaactctacaa 18381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 41710 - 41642
Alignment:
Q  275 taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag 343  Q
    ||||||||||| ||||||||| |||| ||| ||||||||||||||||||| |||||||| || ||||||    
T  41710 taacccacttgggttggcctagtggtattggcttgagatctgagagtatgctcctcctcgaggtctcag 41642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 44342 - 44520
Alignment:
Q  14 ttccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgata 113  Q
    |||||| ||||||||||| |||   ||||||||||  | ||||||| | ||||||||||| |||||||||    ||||||| | |||| || |||||  |    
T  44342 ttccacgtttgattactttcacattatttaatttatgagtttgatttcctattcatttttgttgatgcaaaaagaatgtttatgattttctcttttgtga 44441  T
Q  114 ttgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat 194  Q
    || ||||||| || ||||||||||||  | ||||||||||||||||||  |  || | ||||||||||||| |||||||||    
T  44442 ttttgtatgttga-cactctcaatca-tacttaatttgattgtttctataacttttaatgtaactctaaaattaataatat 44520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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