View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1574_high_9 (Length: 410)
Name: NF1574_high_9
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 122 - 400
Target Start/End: Original strand, 27836429 - 27836706
Alignment:
| Q |
122 |
caaaatgtgttgttgtggagattatttgtgaaaatgatttgatagtatagggnnnnnnnttgaataaatggacttctgaaatctatttgttaatcacctt |
221 |
Q |
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| T |
27836429 |
caaaatgtgt-gttgtggagattatttgtgaagatgatttgatagtatagggaaaaaaattgaataaatggacttctgaaatctatttgttaatcacctt |
27836527 |
T |
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| Q |
222 |
tggatattgagcttcagcaagagattcataatgctccaactctttcctgtctaaaagaaaatagtttataagatacttggctaacaaaaaggaacaaatt |
321 |
Q |
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| T |
27836528 |
tggatattgagcttcagcaagagattcataatggtccaactctttcctgtctaaaagaaaatagtttataagatacttggctaacaaaaaggaacaaatt |
27836627 |
T |
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| Q |
322 |
tttgcaaagttgaaaattgaaaaaatgtgcaacttaaatcttacatgtacttttggttcttgaaatttaaaaacctttg |
400 |
Q |
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| T |
27836628 |
tttgcaaagttgaaaattggaaaaatgtgcaacttaaatcttacatgtacttttggttcttgaaatttaaaaacctttg |
27836706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 27836293 - 27836392
Alignment:
| Q |
20 |
agaggggcatacccttgaatctgcacaagcaattaccataaactgtacttggaattattagttattagaacaa-taaagtctcagtttaattaaaatatg |
118 |
Q |
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| T |
27836293 |
agaggggcacacccttgaatctgcacaagcaattaccataaactgtacttggatttattagttattagaacaattaaagtctcagtttaattaaaatatg |
27836392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 1939603 - 1939655
Alignment:
| Q |
21 |
gaggggcatacccttgaatctgcacaagcaattaccataaactgtacttggaa |
73 |
Q |
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| T |
1939603 |
gaggggcataccctggaatctgcacaggcaataaccatgaactgttcttggaa |
1939655 |
T |
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