View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1574_low_10 (Length: 436)
Name: NF1574_low_10
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 33140896 - 33141304
Alignment:
| Q |
19 |
taaccaaagggtctattgtgacttctgttggtcatgggactacagctttgaagacagtgtccgagtttgacaaatggaaagatgtggcaatcaataaagg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33140896 |
taaccaaagggtctattgtgacttctgttggtcatgggacttcagttttgaagacagtgtccgagtttgacaaatggaaagatgtggcgatcaataaagg |
33140995 |
T |
|
| Q |
119 |
ctttgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggaaaaattccagat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33140996 |
ctttgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctgggaaaattccagat |
33141095 |
T |
|
| Q |
219 |
tttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatggggataaggccaatggtgagcattagctagctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||| |
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| T |
33141096 |
tttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatggcgataaggttaatgctgaacattagctagctt |
33141195 |
T |
|
| Q |
319 |
caccggtctttggcatcggtaaactatgtgtcctatgtttaattattgcattttcttcttagtcttgctcatggtcatttgagtgtgaaatcatctctgt |
418 |
Q |
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||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||| ||| |
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| T |
33141196 |
cactggtctttggcatcggcaaactatatgtcctatgtttaattattgcattttcttcttggtcttctttatggtcatttgagtgtgagatcatctttgt |
33141295 |
T |
|
| Q |
419 |
cagtattat |
427 |
Q |
| |
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|||| |||| |
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|
| T |
33141296 |
cagttttat |
33141304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 33287210 - 33286936
Alignment:
| Q |
19 |
taaccaaagggtctattgtgacttctgttggtcatgggactacagctttgaagacagtgtccgagtttgacaaatggaaagatgtggcaatcaataaagg |
118 |
Q |
| |
|
|||||||||| |||||||||| | ||||||| ||||| ||||||| | ||| ||||||||||||||||||||||||||||| |||||||| || || || |
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| T |
33287210 |
taaccaaaggttctattgtgattgctgttggccatggtactacagtgtcgaaaacagtgtccgagtttgacaaatggaaagaagtggcaattaaaaaggg |
33287111 |
T |
|
| Q |
119 |
ctttgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggaaaaattccagat |
218 |
Q |
| |
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||||||| ||||||| ||||||||| | ||||||||| | || ||||| ||||||||||||||||||||| ||| |||||||||||||| |||||| |
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| T |
33287110 |
ctttgaacatgcatttaatgaacatcataagaaggttgctccttcctttcatctttgctctcaccttgagattcataaagttgctggaaaaatcccagat |
33287011 |
T |
|
| Q |
219 |
tttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatggggataag |
293 |
Q |
| |
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||| | |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||| ||||||| |
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|
| T |
33287010 |
tttgttgagtgtccagattgtcgtcgcagaatggaagtgtttattacctacaagtgttgccatgatgaggataag |
33286936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 33159516 - 33159783
Alignment:
| Q |
19 |
taaccaaagggtctattgtgacttctgttggtcatgggactacagctttgaagacagtgtccgagtttgacaaatggaaagatgtggcaatcaataaagg |
118 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||||||||||||| |||||||||| | | ||||||| || |||||||| || | | || || || |
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|
| T |
33159516 |
taaccaaaggttctattgtgattgctgttggtcatgggactacagttttgaagacatttgcagagtttggcacatggaaaggtgatgtgagcaccaaggg |
33159615 |
T |
|
| Q |
119 |
ctttgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggaaaaattccagat |
218 |
Q |
| |
|
|||||||| | |||||||||| ||||| ||| | |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
33159616 |
ctttgaatactcatttagagagtatcataacacgattgctagttctgttcatatttgctctcaccttgagattcctaatgttgatggaaaaatcccagac |
33159715 |
T |
|
| Q |
219 |
tttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatgg |
286 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |
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|
| T |
33159716 |
tttattaagtgtccagattgtcaccgcacaatggaagtgtatatcagctacaagtgctgccataatgg |
33159783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 33182360 - 33182627
Alignment:
| Q |
19 |
taaccaaagggtctattgtgacttctgttggtcatgggactacagctttgaagacagtgtccgagtttgacaaatggaaagatgtggcaatcaataaagg |
118 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||||||||||||| |||||||||| | | ||||||| || |||||||| || | | || || || |
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| T |
33182360 |
taaccaaaggttctattgtgattgctgttggtcatgggactacagttttgaagacatttgcagagtttggcacatggaaaggtgatgtgagcaccaaggg |
33182459 |
T |
|
| Q |
119 |
ctttgaattcgcatttagagaacatcatcacaaggttgctagtaccgttcatatttgctctcaccttgagattcctaatgttgctggaaaaattccagat |
218 |
Q |
| |
|
||||||| | |||||||||| ||||| ||| | |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
33182460 |
ctttgaacactcatttagagagtatcataacacgattgctagttctgttcatatttgctctcaccttgagattcctaatgttgatggaaaaatcccagac |
33182559 |
T |
|
| Q |
219 |
tttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatgg |
286 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| |
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|
| T |
33182560 |
tttattaagtgtccagattgtcaccgcacaatggaagtgtatatcagctacaagtgctgccataatgg |
33182627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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