View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1574_low_2 (Length: 894)

Name: NF1574_low_2
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1574_low_2
NF1574_low_2
[»] chr2 (8 HSPs)
chr2 (159-883)||(41448175-41448902)
chr2 (159-690)||(41458707-41459251)
chr2 (171-615)||(41442011-41442457)
chr2 (18-159)||(41459280-41459421)
chr2 (25-153)||(41442496-41442624)
chr2 (782-863)||(41458569-41458646)
chr2 (25-71)||(41448986-41449032)
chr2 (836-881)||(41441769-41441814)
[»] chr4 (7 HSPs)
chr4 (256-338)||(23832613-23832695)
chr4 (256-338)||(23819516-23819598)
chr4 (258-332)||(23824842-23824916)
chr4 (256-338)||(23828766-23828848)
chr4 (422-527)||(23828574-23828679)
chr4 (422-522)||(23824651-23824751)
chr4 (422-527)||(23832417-23832522)
[»] chr5 (1 HSPs)
chr5 (415-444)||(10845211-10845240)


Alignment Details
Target: chr2 (Bit Score: 682; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 159 - 883
Target Start/End: Complemental strand, 41448902 - 41448175
Alignment:
Q  159 aaagcaaaagactaaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctccatgtatcactatggcttcactgtgctgaa 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41448902 aaagcaaaagactaaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctccatgtatcactatggcttcactgtgctgaa 41448803  T
Q  259 atgcaagccctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtttctataacattgccaatgtt 358  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41448802 acgcaagccctttggcagcaccaagagcaaccttcagacagaggctccgagagagaggttgaaaatatgagccttctgtttctataacattgccaatgtt 41448703  T
Q  359 aaacaaacttct---gaaattaaaaactaagggaaaagatggaaggtgaagaataactaacttctaaacaagtgattctccaagcttccattggccataa 455  Q
    ||||||||||||   ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41448702 aaacaaacttcttctgaaattaaaaactaagggaaaagatgggaaatgaagaataactaacttctaaacaagtgattctccaagcttccattggccataa 41448603  T
Q  456 actcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaaccttccaaggtagttgacttcagccta 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41448602 actcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaaccttccaaggtagttgacttcagccta 41448503  T
Q  556 gaagtgaaaacaaaaacatagtaaggcaaacttgtattgtctgcacacccaaaaataaaccctcctagttttccaatcataactaattactaacatagta 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41448502 gaagtgaaaacaaaaacatagtaaggcaaacttgtattgtctgcacacccgaaaataaacccacctagttttccaatcataactaattactaacatagta 41448403  T
Q  656 acatagtattattgaaactgtggttttaaatgtagggatttatactaattcagtgaggttagaagaacaagaatgagactaaacaaattgagactttctt 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41448402 acatagtattattgaaactgtggttttaaatgtagggatttatactaattcagtgaggttagaagaacaagaatgagactaaacaaattgagactttatt 41448303  T
Q  756 ttttgaattatttaacaatgtaacagagaaactatttgcttcttaattatgatgagcaaatgatttaatcaagtagattaattaaactcaccaaccactc 855  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41448302 ttttgaattatttaacaatgtaacagagaaactatttgcttcttaattatgatgagcaaatgatttaatcaagtagattaattaaactcaccaaccactc 41448203  T
Q  856 cctgtgaccttgtaagccatcttgatga 883  Q
    ||||||||||||||||||||||||||||    
T  41448202 cctgtgaccttgtaagccatcttgatga 41448175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 159 - 690
Target Start/End: Complemental strand, 41459251 - 41458707
Alignment:
Q  159 aaagcaaaagactaaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctccatgtatcactatggcttca---ctgtgct 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |   ||||   ||||||     
T  41459251 aaagcaaaagactaaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctctatatatcactttattttcagcactgtgca 41459152  T
Q  256 gaaatgcaagccctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtttcta-------taacat 348  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||||||| || |||||||| |||||||| ||| ||||||| |       ||| ||    
T  41459151 gaaatgcaagccctttggcagcgtcaagagcaaccttcagacggaggctccatgaaagaggttggaaatatgatcctcctgtttcaaatttcaataatat 41459052  T
Q  349 tgccaatgttaaacaaacttct---gaaattaaaaactaagggaaaagatggaaggtgaagaataactaacttctaaacaagtgattctccaagcttcca 445  Q
    ||| ||||||||||||||||||   ||| |||||| |||||||||||||||| |   ||| ||||||| ||| || ||||||||||||||||||||||||    
T  41459051 tgctaatgttaaacaaacttcttccgaagttaaaagctaagggaaaagatgggaaaggaataataactcactcctgaacaagtgattctccaagcttcca 41458952  T
Q  446 ttggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaaccttccaaggtagttga 545  Q
       | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  41458951 cgaggcataaactcatagacgagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaaccttccatggtagttta 41458852  T
Q  546 cttcagcctagaagtgaaaacaaaaacatagtaaggcaaacttgtattgtctgcacacccaaaaataaaccctcctagttttccaatcataactaattac 645  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41458851 cttcagcctagaagtgaaaacagaaacatagtaagacaaacttgtattgtctgcacacccaaaaataaaccctcctagttttccaatcataactaattac 41458752  T
Q  646 taacatagtaacatagtattattgaaactgtggttttaaatgtag 690  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  41458751 taacatagtaacatagtattactgaaactgtggttttaaatgtag 41458707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 171 - 615
Target Start/End: Complemental strand, 41442457 - 41442011
Alignment:
Q  171 taaaagtctacaattctacatacagaatccaacaagacatttgaagtcttaaaatctccatgtatcactatggcttca---ctgtgctgaaatgcaagcc 267  Q
    |||||| ||| || ||||||||| ||||||||||||| |||||||||||||||||||| || ||||||| |   ||||   |||||| ||||||||||||    
T  41442457 taaaagactaaaagtctacatacggaatccaacaagatatttgaagtcttaaaatctctatatatcactttattttcatcactgtgcagaaatgcaagcc 41442358  T
Q  268 ctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtttcta-------taacattgccaatgttaa 360  Q
    ||||||||||  ||||||||||||||||||  |||||||| || ||||||||||||||||| ||| ||||||| |       | | ||||| ||||||||    
T  41442357 ctttggcagcgtcaagagcaaccttcagacgaaggctccatgaaagaggttgaaaatatgatcctcctgtttcaaatttcaatgatattgctaatgttaa 41442258  T
Q  361 acaaacttct---gaaattaaaaactaagggaaaagatggaaggtgaagaataactaacttctaaacaagtgattctccaagcttccattggccataaac 457  Q
    ||||||| ||   ||| ||||||||||||||||||||          | ||||||| ||| || ||||||||||||||||||||||||   | |||||||    
T  41442257 acaaactccttccgaagttaaaaactaagggaaaaga----------ataataacttactcctgaacaagtgattctccaagcttccacgaggcataaac 41442168  T
Q  458 tcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaaccttccaaggtagttgacttcagcctaga 557  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| |    
T  41442167 tcatagacgagaagacggtgttcatcttcaaggcaataaccgatcaatctcactaaatgaggatgagaaaactgtccaagatagttgacttcagcctaaa 41442068  T
Q  558 agtgaaaacaaaaacatagtaaggcaaacttgtattgtctgcacacccaaaaataaac 615  Q
    ||||||||| |||||||| |||||||||| |||||||||||||  |||||| ||||||    
T  41442067 agtgaaaac-aaaacatattaaggcaaacatgtattgtctgcaatcccaaacataaac 41442011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 41459421 - 41459280
Alignment:
Q  18 aacgtgttggtgaagatgtgacttttgtcacctgttgaaccatcccttgccagcccaaaatcagaaagctttgcattataatcctgcaaccaaatacagg 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41459421 aacgtgttggtgaagatgtgacttttgtcacctgttggaccatcccttgccagcccaaaatcagaaagctttgcattataatcctgcaaccaaatacagg 41459322  T
Q  118 aatatgtatcagacatgttatccaaataatctcttaaattta 159  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41459321 aatatgtatcagacatgttatccaaataatctcttaaattta 41459280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 41442624 - 41442496
Alignment:
Q  25 tggtgaagatgtgacttttgtcacctgttgaaccatcccttgccagcccaaaatcagaaagctttgcattataatcctgcaaccaaatacaggaatatgt 124  Q
    ||||| ||| ||| |||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||  || ||| | |    
T  41442624 tggtggagacgtggcttttgtcacctgttggaccatcctttgccagcccgaaatcagaaagctttgcattataatcctgcaatcaaatcaagaaatgtat 41442525  T
Q  125 atcagacatgttatccaaataatctctta 153  Q
     |||  |||||| ||| ||||||||||||    
T  41442524 ttcaaccatgttttccgaataatctctta 41442496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 863
Target Start/End: Complemental strand, 41458646 - 41458569
Alignment:
Q  782 agaaactatttgcttcttaattatgatgagcaaatgatttaatcaagtagattaattaaactcaccaaccactccctgtgac 863  Q
    ||||||||| |||||||||||||| |  |||||||||||||| ||||||     |||||||| |||||||||||||||||||    
T  41458646 agaaactatctgcttcttaattatcaaaagcaaatgatttaaacaagta----tattaaactaaccaaccactccctgtgac 41458569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 41449032 - 41448986
Alignment:
Q  25 tggtgaagatgtgacttttgtcacctgttgaaccatcccttgccagc 71  Q
    ||||| ||| ||||||||| |||||||||| ||||||||||||||||    
T  41449032 tggtggagacgtgacttttctcacctgttggaccatcccttgccagc 41448986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 836 - 881
Target Start/End: Complemental strand, 41441814 - 41441769
Alignment:
Q  836 attaaactcaccaaccactccctgtgaccttgtaagccatcttgat 881  Q
    ||||||||||||||||||||||||||||| || ||||  |||||||    
T  41441814 attaaactcaccaaccactccctgtgaccctggaagctttcttgat 41441769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 256 - 338
Target Start/End: Complemental strand, 23832695 - 23832613
Alignment:
Q  256 gaaatgcaagccctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtt 338  Q
    |||||||||| |||||||||||||||||||||||||||| ||  ||||||||||| ||||||||||||||||||||| |||||    
T  23832695 gaaatgcaaggcctttggcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgtt 23832613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 256 - 338
Target Start/End: Complemental strand, 23819598 - 23819516
Alignment:
Q  256 gaaatgcaagccctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtt 338  Q
    |||||||||| |||||||||||||||| |||||||||||  | |||||||||||| ||||||||||||||||||||| |||||    
T  23819598 gaaatgcaaggcctttggcagcaccaacagcaaccttcaaccggaggctccaagaaagaggttgaaaatatgagcctcctgtt 23819516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 23824916 - 23824842
Alignment:
Q  258 aatgcaagccctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagcct 332  Q
    |||||||| | |||||||||||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||    
T  23824916 aatgcaagacatttggcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcct 23824842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 256 - 338
Target Start/End: Complemental strand, 23828848 - 23828766
Alignment:
Q  256 gaaatgcaagccctttggcagcaccaagagcaaccttcagacagaggctccaagagagaggttgaaaatatgagccttctgtt 338  Q
    |||||| ||| ||||| |||||||||||||||||||||| ||  ||||||||||| ||||||||||||||||||||| |||||    
T  23828848 gaaatgtaaggcctttagcagcaccaagagcaaccttcaaacgtaggctccaagaaagaggttgaaaatatgagcctcctgtt 23828766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 527
Target Start/End: Complemental strand, 23828679 - 23828574
Alignment:
Q  422 aacaagtgattctccaagcttccattggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggat 521  Q
    |||||||||||||||||||| |||   | |||||| ||||| |  ||||| | || ||||| |||||| |||||||| |||||| |||||| ||||||||    
T  23828679 aacaagtgattctccaagctgccacgtggcataaattcataaatcagaaggctgttttcatcttcaagacaataaccaatcaatttcactagatgaggat 23828580  T
Q  522 gagaaa 527  Q
    | ||||    
T  23828579 gtgaaa 23828574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 422 - 522
Target Start/End: Complemental strand, 23824751 - 23824651
Alignment:
Q  422 aacaagtgattctccaagcttccattggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggat 521  Q
    |||||||||||||||||||| |||   | |||||| |||||||| | ||| |  | ||||| |||||| |||||||| |||||| |||||| ||||||||    
T  23824751 aacaagtgattctccaagctgccacgtggcataaattcatagaccaaaaggctattttcatcttcaagacaataaccaatcaatttcactagatgaggat 23824652  T
Q  522 g 522  Q
    |    
T  23824651 g 23824651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 527
Target Start/End: Complemental strand, 23832522 - 23832417
Alignment:
Q  422 aacaagtgattctccaagcttccattggccataaactcatagactagaagacggtgttcattttcaaggcaataaccgatcaatctcactaaatgaggat 521  Q
    |||||||||||||||||| | |||   | ||| || ||| |||| ||||||| ||  |||| ||||||||||||||| |||||| | | || ||||||||    
T  23832522 aacaagtgattctccaagttgccacgaggcatgaattcaaagacaagaagactgttgtcatcttcaaggcaataaccaatcaatttgattagatgaggat 23832423  T
Q  522 gagaaa 527  Q
    ||||||    
T  23832422 gagaaa 23832417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 444
Target Start/End: Original strand, 10845211 - 10845240
Alignment:
Q  415 acttctaaacaagtgattctccaagcttcc 444  Q
    ||||||||||||||||||||||||||||||    
T  10845211 acttctaaacaagtgattctccaagcttcc 10845240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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