View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1574_low_4 (Length: 694)
Name: NF1574_low_4
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574_low_4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 2 - 694
Target Start/End: Complemental strand, 29836834 - 29836142
Alignment:
| Q |
2 |
tttgttgttcaaatttcgcttcaattcaactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttact |
101 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||| || ||| | |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29836834 |
tttgttgttcaaatttttcttcaattcaactcgaagaagatcaaggttattggtattccattctcttgaagtgacaacttcaaggagagatttggttact |
29836735 |
T |
|
| Q |
102 |
ctaaaaatatcaaaatcttcagacacacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtatataagttgagtgagggtcgttt |
201 |
Q |
| |
|
|| || |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
|
|
| T |
29836734 |
ctcaacatatcaaaatcttcagacacacaaacccagacttgtacatcaaaatgatttttaacttcttcctggttgtatataagtcgagcgagggtcgttt |
29836635 |
T |
|
| Q |
202 |
taccgagacctcccatgcctgtaattgcgactacacctatattattattgtctgtatctgatatcaacatattaactagttcctctttatcatccttcct |
301 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29836634 |
taccgatacctcccatgcctgtaattgcgactacacctatattattattgtctgtatctgatatcaacatattaactagttcctctttatcatccttcct |
29836535 |
T |
|
| Q |
302 |
accaaccgtgaaatattcatctactactgatgatgtaggagttcgagacaaaaccttcgaacttaccctttgcaagccaaggatatctttctgttgggca |
401 |
Q |
| |
|
||||||||||| |||||||| ||||| | ||| |||||||| || || |||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29836534 |
accaaccgtgacatattcatttactagtaatgttgtaggaggtccagtcaaaaccttccaacttaccgtttgcaagccaaggatatctttctgttgggca |
29836435 |
T |
|
| Q |
402 |
aagaactgcagtctttcacaagatatctttatttgggaattcacttctccattggtgttagaaaaaagagatgaaaggaagttcagcacctgatttgtga |
501 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29836434 |
aagagctgcagtctttcacaagatatctttatttgggaattcacttctccattggtgttagaaaaaagagatgaaaggaagttcagcacctgatttgtga |
29836335 |
T |
|
| Q |
502 |
ccttggattgtatggaatcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttttaaatcattaagccattctcggacagccggatc |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29836334 |
ccttggattgtatggaatcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttttaaatcattaagccattctcggacagccggatc |
29836235 |
T |
|
| Q |
602 |
atggatctgcttcatctctgcatcaactagcaccgcttcaagagtgagaagtgttgtttgcaactgcttcaagagagagtgattcagcttcat |
694 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29836234 |
atggatctgcttcctctctgcatcaactagcaccgcttcaagagtgagaagtgttgtttgcaactgcttcaagagagagtgattcagcttcat |
29836142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 27 - 331
Target Start/End: Complemental strand, 26907063 - 26906753
Alignment:
| Q |
27 |
tcaactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagaca |
126 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||| ||| |||||| |||||||||||||||||||||||| | |||||||||||| ||||||| |
|
|
| T |
26907063 |
tcaactcgaaggacatcaagattattggtatcccaagttctggaagtgaccgattcaaggagagatttggttactctcataatatcaaaatcctcagaca |
26906964 |
T |
|
| Q |
127 |
cacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaat |
226 |
Q |
| |
|
||||| |||| || || | ||||||||| || ||||||||| | ||||| | |||||| | ||||| ||||| || | |||||||||||| ||| |
|
|
| T |
26906963 |
cacaaacccatgccttcaaatcaaaatgccgttgaacttctttatcattgtaaagaagttgggcaagggtagtttttcctaaacctcccatgcccaaaat |
26906864 |
T |
|
| Q |
227 |
tgcgactacacctatattattat------tgtctgtatctgatatcaacatattaactagttcctctttatcatccttcctaccaaccgtgaaatattca |
320 |
Q |
| |
|
||| || |||||||||||||||| ||||| | ||||||| ||||||||| | || | |||||| |||||||||||||| ||| ||| | ||||| |
|
|
| T |
26906863 |
tgcaacaacacctatattattatgggttgtgtctctctctgatagcaacatattcattattgtctctttgtcatccttcctacccaccatgacagattca |
26906764 |
T |
|
| Q |
321 |
tctactactga |
331 |
Q |
| |
|
| ||| ||||| |
|
|
| T |
26906763 |
tttaccactga |
26906753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 496
Target Start/End: Complemental strand, 26906714 - 26906588
Alignment:
| Q |
370 |
tttgcaagccaaggatatctttctgttgggcaaagaactgcagtctttcacaagatatctttatttgggaattcacttctccattggtgttagaaaaaag |
469 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||| || ||||| |||||||| |||||| ||||| ||||| | |||| | | | || |||| | |
|
|
| T |
26906714 |
tttgcaaaccaaggatatctttatgttgtgcaaacaattgcaggctttcacacattatcttcatttgagaattgatctctctgtagaagctattaaaagg |
26906615 |
T |
|
| Q |
470 |
agatgaaaggaagttcagcacctgatt |
496 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
26906614 |
agatgaaaggaagttcaacacctgatt |
26906588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 32)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 28 - 331
Target Start/End: Original strand, 10375749 - 10376058
Alignment:
| Q |
28 |
caactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagacac |
127 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||||| |||| |||||| |||||||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
10375749 |
caactcgaaggacatcaagattattgctatcccatgttcttgaagtgaccgattcaaggagagacttggttactctcaaaatatcaaaatcctcagacac |
10375848 |
T |
|
| Q |
128 |
acaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaatt |
227 |
Q |
| |
|
||||||||| || || | ||||||||| | || ||||| || | ||||| | |||||| | ||||| ||||| || | |||||||||||| |||| |
|
|
| T |
10375849 |
acaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgtgcaagggtagtttttcctaaacctcccatgcccaaaatt |
10375948 |
T |
|
| Q |
228 |
gcgactacacctatattattat------tgtctgtatctgatatcaacatattaactagttcctctttatcatccttcctaccaaccgtgaaatattcat |
321 |
Q |
| |
|
|| || |||||||||||||||| ||||||| ||||||| |||||| || | || |||||||||||||||||||| ||| ||| | |||||| |
|
|
| T |
10375949 |
gcaacaacacctatattattatgcgatgtgtctgtctctgatagcaacatgttcattatagtgtctttatcatccttcctacccaccatgacagattcat |
10376048 |
T |
|
| Q |
322 |
ctactactga |
331 |
Q |
| |
|
||| ||||| |
|
|
| T |
10376049 |
ttaccactga |
10376058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 27 - 249
Target Start/End: Original strand, 10433947 - 10434169
Alignment:
| Q |
27 |
tcaactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagaca |
126 |
Q |
| |
|
||||| ||||| |||||||| ||||||| ||||||| ||| |||||| |||||||||||| ||||||||| | |||||||||||||| | ||||| |
|
|
| T |
10433947 |
tcaacacgaaggacatcaagattattgctatcccaagttctggaagtgaccgattcaaggagagacttggttactttcaaaatatcaaaatcctgagaca |
10434046 |
T |
|
| Q |
127 |
cacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaat |
226 |
Q |
| |
|
||||||||||||| || | ||||||||| | || ||||||||| | ||||| | |||||| | ||||| ||||| || | ||||||||||||| ||| |
|
|
| T |
10434047 |
cacaagcccaggccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaat |
10434146 |
T |
|
| Q |
227 |
tgcgactacacctatattattat |
249 |
Q |
| |
|
||| || |||||||| ||||||| |
|
|
| T |
10434147 |
tgcaacaacacctatcttattat |
10434169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 10032125 - 10031947
Alignment:
| Q |
71 |
agtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagacacacaagcccaggcttttacatcaaaatgatttttaacttctttc |
170 |
Q |
| |
|
||||||| |||||||||||| || |||||||| | |||||||||||| |||||||||||||||||||| || | ||||||||| | || ||||||||| |
|
|
| T |
10032125 |
agtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaagcccaggccttcaaatcaaaatgttgttgaacttcttta |
10032026 |
T |
|
| Q |
171 |
tggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaattgcgactacacctatattattat |
249 |
Q |
| |
|
| ||||| | |||||| | ||||| ||||| || | |||||||||||| |||||| || |||||||||||||||| |
|
|
| T |
10032025 |
tcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattat |
10031947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 11769400 - 11769178
Alignment:
| Q |
27 |
tcaactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagaca |
126 |
Q |
| |
|
||||||||||| | |||||| ||||||| ||||||| |||| |||||| |||||||||||| |||||||||| | |||||||||||| ||||||| |
|
|
| T |
11769400 |
tcaactcgaaggatatcaagattattgctatcccaagttcttgaagtgaccgattcaaggagagacctggttactctcataatatcaaaatcctcagaca |
11769301 |
T |
|
| Q |
127 |
cacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaat |
226 |
Q |
| |
|
| |||||||| || || | |||||||| | || ||||||||| | ||||| | |||||||| ||||| ||||| || | |||||||||||| ||| |
|
|
| T |
11769300 |
cgcaagcccatgccttcaaatcaaaatattgttgaacttctttatcattgtagacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaat |
11769201 |
T |
|
| Q |
227 |
tgcgactacacctatattattat |
249 |
Q |
| |
|
||| || |||||||||||||||| |
|
|
| T |
11769200 |
tgcaacaacacctatattattat |
11769178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 10127093 - 10126872
Alignment:
| Q |
28 |
caactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagacac |
127 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||| | | ||||||| |||||||||||| || |||||||| | |||||||||||| |||||||| |
|
|
| T |
10127093 |
caactcgaaggacatcaagattattgctatcccaagttgtggaagtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacac |
10126994 |
T |
|
| Q |
128 |
acaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaatt |
227 |
Q |
| |
|
|||| |||| || || | ||||||||| | || ||||||||| | ||||| | |||||| | ||||| ||||| || | |||||||||||| |||| |
|
|
| T |
10126993 |
acaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcccaaacctcccatgcccaaaatt |
10126894 |
T |
|
| Q |
228 |
gcgactacacctatattattat |
249 |
Q |
| |
|
|| || |||||||||||||||| |
|
|
| T |
10126893 |
gcaacaacacctatattattat |
10126872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 10260864 - 10260644
Alignment:
| Q |
27 |
tcaactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagaca |
126 |
Q |
| |
|
||||||||||| | ||||| |||||| |||||||| ||| |||||| |||||||||||| ||||||||||| | |||||||||||| ||||||| |
|
|
| T |
10260864 |
tcaactcgaaggatgtcaagattattgatatcccaatttctagaagtgactgattcaaggagagacttggttactctcataatatcaaaatcctcagaca |
10260765 |
T |
|
| Q |
127 |
cacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaat |
226 |
Q |
| |
|
|||||||||| || || | |||||||| | || ||||||||| | ||||| | |||||||| ||||| ||||| || | |||||||||||| ||| |
|
|
| T |
10260764 |
cacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaat |
10260665 |
T |
|
| Q |
227 |
tgcgactacacctatattatt |
247 |
Q |
| |
|
||| || |||||||||||||| |
|
|
| T |
10260664 |
tgcaacaacacctatattatt |
10260644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 27 - 242
Target Start/End: Complemental strand, 10184408 - 10184193
Alignment:
| Q |
27 |
tcaactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagaca |
126 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||||||| | | ||||||| |||||||||||| ||||||||||| | |||||||||||| || |||| |
|
|
| T |
10184408 |
tcaactcgaaggacatcaagattattgctatcccaagttgtggaagtgacagattcaaggagagacttggttactctcataatatcaaaatcctcggaca |
10184309 |
T |
|
| Q |
127 |
cacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaat |
226 |
Q |
| |
|
|||||||||| || | | ||||||||| | || ||||||||| | ||||| | |||||||| ||||| ||||| || | |||||||||||| ||| |
|
|
| T |
10184308 |
cacaagcccacgccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaagggtagtttttcctaaacctcccatgcccaaaat |
10184209 |
T |
|
| Q |
227 |
tgcgactacacctata |
242 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
10184208 |
tgcaacaacacctata |
10184193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 71 - 247
Target Start/End: Complemental strand, 10088912 - 10088736
Alignment:
| Q |
71 |
agtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagacacacaagcccaggcttttacatcaaaatgatttttaacttctttc |
170 |
Q |
| |
|
||||||| |||||||||||| || |||||||| | |||||||||||| |||||||||||| |||| || || | ||||||||| | || ||||||||| |
|
|
| T |
10088912 |
agtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttcttta |
10088813 |
T |
|
| Q |
171 |
tggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaattgcgactacacctatattatt |
247 |
Q |
| |
|
| ||||| | |||||| | ||||| ||||| || | ||||||||||||| |||||| || |||||||||||||| |
|
|
| T |
10088812 |
tcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacctatattatt |
10088736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 71 - 247
Target Start/End: Complemental strand, 10195795 - 10195619
Alignment:
| Q |
71 |
agtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagacacacaagcccaggcttttacatcaaaatgatttttaacttctttc |
170 |
Q |
| |
|
||||||| |||||||||||| || |||||||| | |||||||||||| |||||||||||| |||| || || | ||||||||| | || ||||||||| |
|
|
| T |
10195795 |
agtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttcttta |
10195696 |
T |
|
| Q |
171 |
tggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaattgcgactacacctatattatt |
247 |
Q |
| |
|
| ||||| | |||||| | ||||| ||||| || | ||||||||||||| |||||| || |||||||||||||| |
|
|
| T |
10195695 |
tcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacctatattatt |
10195619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 10663648 - 10663470
Alignment:
| Q |
71 |
agtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagacacacaagcccaggcttttacatcaaaatgatttttaacttctttc |
170 |
Q |
| |
|
||||||| |||||||||||| || |||||||| | |||||||||||| |||||||||||| |||| || || | ||||||||| | || ||||||||| |
|
|
| T |
10663648 |
agtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttcttta |
10663549 |
T |
|
| Q |
171 |
tggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaattgcgactacacctatattattat |
249 |
Q |
| |
|
| ||||| | |||||| | ||||| ||||| || | |||||||||||| |||||| || |||||||||||||||| |
|
|
| T |
10663548 |
tcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattat |
10663470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 9838974 - 9838805
Alignment:
| Q |
80 |
ttcaaggagagatttggttactctaaaaatatcaaaatcttcagacacacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtat |
179 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| || | | ||||||||| | || |||||||| | ||||| |
|
|
| T |
9838974 |
ttcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaa |
9838875 |
T |
|
| Q |
180 |
ataagttgagtgagggtcgttttaccgagacctcccatgcctgtaattgcgactacacctatattattat |
249 |
Q |
| |
|
| |||||| | ||||| ||||| || | |||||||||||| |||||| || ||||||||||| |||| |
|
|
| T |
9838874 |
acaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttat |
9838805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 9849852 - 9849683
Alignment:
| Q |
80 |
ttcaaggagagatttggttactctaaaaatatcaaaatcttcagacacacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtat |
179 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| || | | ||||||||| | || |||||||| | ||||| |
|
|
| T |
9849852 |
ttcaaggagagacttggttactctcaaaatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaa |
9849753 |
T |
|
| Q |
180 |
ataagttgagtgagggtcgttttaccgagacctcccatgcctgtaattgcgactacacctatattattat |
249 |
Q |
| |
|
| |||||| | ||||| ||||| || | |||||||||||| |||||| || ||||||||||| |||| |
|
|
| T |
9849752 |
acaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattgttat |
9849683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 11159919 - 11160144
Alignment:
| Q |
26 |
ttcaactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagac |
125 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||||| |||| ||||||| |||||| |||| ||| ||||| |||||||||||||| ||||| |
|
|
| T |
11159919 |
ttcaactcgaagaaaatcaagattattggtttcccaagctcttgaagtgacagattcaagaagagttttagttacagataaaatatcaaaatcctcagat |
11160018 |
T |
|
| Q |
126 |
acacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaa |
225 |
Q |
| |
|
||||||||||| ||||| | ||||||||||| || ||||| || | ||||| | |||||| | || ||||||||||||| ||||||||| ||| || |
|
|
| T |
11160019 |
acacaagcccatgctttgaaatcaaaatgatcttgaactttttcattattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaa |
11160118 |
T |
|
| Q |
226 |
ttgcgactacacctatattattattg |
251 |
Q |
| |
|
|||| || || |||||||| |||||| |
|
|
| T |
11160119 |
ttgcaacaacgcctatattgttattg |
11160144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 80 - 247
Target Start/End: Original strand, 10363754 - 10363921
Alignment:
| Q |
80 |
ttcaaggagagatttggttactctaaaaatatcaaaatcttcagacacacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtat |
179 |
Q |
| |
|
|||||||||||| || |||||||| | |||||||||||| ||||| |||||| |||| || || | ||||||||| | || ||||||||| | ||||| |
|
|
| T |
10363754 |
ttcaaggagagactttgttactctcataatatcaaaatcctcagagacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaa |
10363853 |
T |
|
| Q |
180 |
ataagttgagtgagggtcgttttaccgagacctcccatgcctgtaattgcgactacacctatattatt |
247 |
Q |
| |
|
| |||||| | ||||| ||||| || | ||||||||||||| |||||| || |||||||||||||| |
|
|
| T |
10363854 |
acaagttgggcaagggtagtttttcctaaacctcccatgcctaaaattgcaacaacacctatattatt |
10363921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 10580723 - 10580545
Alignment:
| Q |
71 |
agtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagacacacaagcccaggcttttacatcaaaatgatttttaacttctttc |
170 |
Q |
| |
|
||||||| |||||||||||| || |||||||| | |||||||||||| |||||||||||| |||| || || | |||||||| | || ||||||||| |
|
|
| T |
10580723 |
agtgacagattcaaggagagactttgttactctcataatatcaaaatcctcagacacacaaacccacgccttcatgtcaaaatgttgttgaacttcttta |
10580624 |
T |
|
| Q |
171 |
tggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaattgcgactacacctatattattat |
249 |
Q |
| |
|
| ||||| | |||||| | ||||| ||||| || | |||||||||||| |||||| || |||||||||||||||| |
|
|
| T |
10580623 |
tcattgtaaacaagttgggcaagggtagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattat |
10580545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 522 - 691
Target Start/End: Original strand, 11149282 - 11149451
Alignment:
| Q |
522 |
taactaatttggttcagcaaatcctctgtatcatagattgcatcttttaaatcattaagccattctcggacagccggatcatggatctgcttcatctctg |
621 |
Q |
| |
|
||||||||||| |||||||||||||| | |||| |||| |||||||| || |||| |||||||| | |||||| |||| | |||||||||| || | |
|
|
| T |
11149282 |
taactaatttgattcagcaaatcctcggcatcaaagatagcatctttcaagtcatcaagccattgtttgacagcaggattgttgatctgcttctcatcag |
11149381 |
T |
|
| Q |
622 |
catcaactagcaccgcttcaagagtgagaagtgttgtttgcaactgcttcaagagagagtgattcagctt |
691 |
Q |
| |
|
||||| | ||||| |||| |||| || ||||||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
11149382 |
catcatccagcacagcttgaagaaccagcagtgttgtttgtaactgcttcaagagtgagacattcagctt |
11149451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 11130922 - 11131053
Alignment:
| Q |
20 |
cttcaattcaactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttactctaaaaatatcaaaatct |
119 |
Q |
| |
|
||||| |||||||||||||| |||||| |||||| |||||| ||| ||||||| ||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
11130922 |
cttcagttcaactcgaagaaaatcaagattattgttttcccaagcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcc |
11131021 |
T |
|
| Q |
120 |
tcagacacacaagcccaggcttttacatcaaa |
151 |
Q |
| |
|
|| || ||||||||||| ||||| | |||||| |
|
|
| T |
11131022 |
tccgatacacaagcccatgctttgagatcaaa |
11131053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 11148750 - 11148881
Alignment:
| Q |
20 |
cttcaattcaactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttactctaaaaatatcaaaatct |
119 |
Q |
| |
|
||||| |||||||||||||| |||||| |||||| |||||| ||| ||||||| ||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
11148750 |
cttcagttcaactcgaagaaaatcaagattattgttttcccaagcccttgaagtgacagattcaaggagagttttagttactcttaaaatatcaaaatcc |
11148849 |
T |
|
| Q |
120 |
tcagacacacaagcccaggcttttacatcaaa |
151 |
Q |
| |
|
|| || ||||||||||| ||||| | |||||| |
|
|
| T |
11148850 |
tccgatacacaagcccatgctttgagatcaaa |
11148881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 691
Target Start/End: Original strand, 10434451 - 10434641
Alignment:
| Q |
501 |
accttggattgtatggaatcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttttaaatcattaagccattctcggacagccggat |
600 |
Q |
| |
|
||||||||| | | |||||| ||||| |||| ||| ||||| ||||| | |||| ||| |||||||| || |||| |||||||| | |||||| || | |
|
|
| T |
10434451 |
accttggatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatcaagccattgtttgacagcaggtt |
10434550 |
T |
|
| Q |
601 |
catggatctgcttcatctctgcatcaactagcaccgcttcaagagtgagaagtgttgtttgcaactgcttcaagagagagtgattcagctt |
691 |
Q |
| |
|
| |||||||||| |||||||||| | ||||| ||| |||||||||||||||||||| || |||| ||||||| |||| ||| ||||| |
|
|
| T |
10434551 |
tgttgatctgcttctcctctgcatcatccagcacaacttgaagagtgagaagtgttgttttcagctgcctcaagagtgagtcattgagctt |
10434641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 10077382 - 10077326
Alignment:
| Q |
80 |
ttcaaggagagatttggttactctaaaaatatcaaaatcttcagacacacaagccca |
136 |
Q |
| |
|
|||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
10077382 |
ttcaaggagagacttggttactctcataatatcaaaatcctcagacacacaagccca |
10077326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 691
Target Start/End: Complemental strand, 10888947 - 10888778
Alignment:
| Q |
522 |
taactaatttggttcagcaaatcctctgtatcatagattgcatcttttaaatcattaagccattctcggacagccggatcatggatctgcttcatctctg |
621 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| ||| |||||||| || |||| |||||||| | |||||| | | | |||||||||| ||| | |
|
|
| T |
10888947 |
taactaatttggttcagcaaatcctccgcatcaaagacagcatctttcaagtcatcaagccattgtttgacagcacggttgttgatctgcttctcctcag |
10888848 |
T |
|
| Q |
622 |
catcaactagcaccgcttcaagagtgagaagtgttgtttgcaactgcttcaagagagagtgattcagctt |
691 |
Q |
| |
|
||||| | ||||| |||| |||| || || |||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
10888847 |
catcatccagcacagcttgaagaaccagcagcgttgtttgtaactgcttcaagagtgagacattcagctt |
10888778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 8861453 - 8861229
Alignment:
| Q |
26 |
ttcaactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagac |
125 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||||| |||| ||||||| |||||| |||| ||| ||||| | ||||||||||||| || || |
|
|
| T |
8861453 |
ttcaactcgaagaaaatcaagattattgttttcccaagctcttgaagtgacagattcaagaagagttttagttacagttgaaatatcaaaatcctctgat |
8861354 |
T |
|
| Q |
126 |
acacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaa |
225 |
Q |
| |
|
||||||||||| ||||| | |||||| || | || ||||| || | ||||| | |||||| | || ||||||||||||| ||||||||| ||| || |
|
|
| T |
8861353 |
acacaagcccatgctttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaa |
8861254 |
T |
|
| Q |
226 |
ttgcgactacacctatattattatt |
250 |
Q |
| |
|
|||| || ||||| ||||| ||||| |
|
|
| T |
8861253 |
ttgcaacaacaccgatattgttatt |
8861229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 10889473 - 10889249
Alignment:
| Q |
26 |
ttcaactcgaagaacatcaaggttattgcaatcccaatatcttttagtgacaacttcaaggagagatttggttactctaaaaatatcaaaatcttcagac |
125 |
Q |
| |
|
|||||||||||||| ||| || |||||| |||||| |||| ||| ||| |||||| |||| ||| ||||| | |||||||||||||| ||||| |
|
|
| T |
10889473 |
ttcaactcgaagaaaatctagattattgttttcccaagctcttgaagtcacagattcaagaagagttttagttacagttaaaatatcaaaatcctcagat |
10889374 |
T |
|
| Q |
126 |
acacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtatataagttgagtgagggtcgttttaccgagacctcccatgcctgtaa |
225 |
Q |
| |
|
||||||||||| ||||| | |||||| || | || ||||| || | ||||| | |||||| | || ||||||||||||| ||||||||| ||| || |
|
|
| T |
10889373 |
acacaagcccatgctttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccgacacctcccatacctaaaa |
10889274 |
T |
|
| Q |
226 |
ttgcgactacacctatattattatt |
250 |
Q |
| |
|
|||| || ||||| ||||| ||||| |
|
|
| T |
10889273 |
ttgcaacaacaccgatattgttatt |
10889249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 660
Target Start/End: Complemental strand, 10580249 - 10580104
Alignment:
| Q |
515 |
ggaatcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttttaaatcattaagccattctcggacagccggatcatggatctgcttc |
614 |
Q |
| |
|
|||||||||||| |||| || ||||| ||||| | |||| ||| |||||||| || |||| ||||||| | |||||| |||| || |||||||||| |
|
|
| T |
10580249 |
ggaatcgtaactgatttcattgagcaagtcctcagcatcaatgatagcatctttcaagtcatcaagccatagtttgacagcaggattattgatctgcttc |
10580150 |
T |
|
| Q |
615 |
atctctgcatcaactagcaccgcttcaagagtgagaagtgttgttt |
660 |
Q |
| |
|
|||||||||| | ||||| ||| ||||||||| |||||||||| |
|
|
| T |
10580149 |
tcctctgcatcatccagcacaacttgaagagtgagcagtgttgttt |
10580104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 676
Target Start/End: Complemental strand, 8860933 - 8860773
Alignment:
| Q |
516 |
gaatcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttttaaatcattaagccattctcggacagccggatcatggatctgcttca |
615 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||| | |||| ||| |||||||| || |||| |||||||| | |||||| ||| | |||||||||| |
|
|
| T |
8860933 |
gaatcataactgatttggttgagcaaatcctcagcatcaaagagagcatctttcaagtcatcaagccattgtttgacagcacgattgttgatctgcttct |
8860834 |
T |
|
| Q |
616 |
tctctgcatcaactagcaccgcttcaagagtgagaagtgttgtttgcaactgcttcaagag |
676 |
Q |
| |
|
|||||||||| | ||||| |||| |||| || || |||| ||| |||||||||||||| |
|
|
| T |
8860833 |
cctctgcatcatccagcacagcttgaagaaccagcagcgttgcttgtaactgcttcaagag |
8860773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 515 - 681
Target Start/End: Original strand, 10364219 - 10364385
Alignment:
| Q |
515 |
ggaatcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttttaaatcattaagccattctcggacagccggatcatggatctgcttc |
614 |
Q |
| |
|
|||||| ||||| |||| || ||||||||||| | |||| ||| |||||||| || ||| |||||||| | |||||| |||| | |||||||||| |
|
|
| T |
10364219 |
ggaatcataactgatttcgtgaagcaaatcctcggcatcaaagacagcatctttcaagccatcaagccattgtttgacagcaggattgttgatctgcttc |
10364318 |
T |
|
| Q |
615 |
atctctgcatcaactagcaccgcttcaagagtgagaagtgttgtttgcaactgcttcaagagagagt |
681 |
Q |
| |
|
||||| ||| | ||||| ||| ||||||||| ||||||||||| |||||| ||||||| |||| |
|
|
| T |
10364319 |
tcttctgcgtcatccagcacaacttgaagagtgagcagtgttgtttgtaactgcctcaagagtgagt |
10364385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 568
Target Start/End: Complemental strand, 13160624 - 13160575
Alignment:
| Q |
519 |
tcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttt |
568 |
Q |
| |
|
|||||| | |||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
13160624 |
tcgtaattgatttggttaagcaaatcctcagcatcatagattgcatcttt |
13160575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 568
Target Start/End: Complemental strand, 13170675 - 13170626
Alignment:
| Q |
519 |
tcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttt |
568 |
Q |
| |
|
|||||| | |||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
13170675 |
tcgtaattgatttggttaagcaaatcctcagcatcatagattgcatcttt |
13170626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 568
Target Start/End: Complemental strand, 13289309 - 13289260
Alignment:
| Q |
519 |
tcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttt |
568 |
Q |
| |
|
|||||| | |||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
13289309 |
tcgtaattgatttggttaagcaaatcctcagcatcatagattgcatcttt |
13289260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 568
Target Start/End: Complemental strand, 13332548 - 13332499
Alignment:
| Q |
519 |
tcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttt |
568 |
Q |
| |
|
|||||| | |||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
13332548 |
tcgtaattgatttggttaagcaaatcctcagcatcatagattgcatcttt |
13332499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 511 - 571
Target Start/End: Complemental strand, 10031643 - 10031583
Alignment:
| Q |
511 |
gtatggaatcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttttaa |
571 |
Q |
| |
|
|||||| || ||| || ||||| || ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
10031643 |
gtatggcattgtagctgatttgattgagcaaatcctcagcatcatagattgcatcttttaa |
10031583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 528 - 568
Target Start/End: Complemental strand, 13343724 - 13343684
Alignment:
| Q |
528 |
atttggttcagcaaatcctctgtatcatagattgcatcttt |
568 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
13343724 |
atttggttaagcaaatcctcagcatcatagattgcatcttt |
13343684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 217
Target Start/End: Original strand, 17852900 - 17853037
Alignment:
| Q |
80 |
ttcaaggagagatttggttactctaaaaatatcaaaatcttcagacacacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtat |
179 |
Q |
| |
|
|||||||||||| ||||||||||| | || |||||||||||| || |||||| |||||||||| | ||||||||||| || ||| | || | ||||| |
|
|
| T |
17852900 |
ttcaaggagagacttggttactctcacaacatcaaaatcttctgatacacaaacccaggctttgagatcaaaatgatgttcaaccttttcatcattgtaa |
17852999 |
T |
|
| Q |
180 |
ataagttgagtgagggtcgttttaccgagacctcccat |
217 |
Q |
| |
|
| ||| || | |||||||||||||||| ||||||||| |
|
|
| T |
17853000 |
acaagctgtgcaagggtcgttttaccgacacctcccat |
17853037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 94 - 327
Target Start/End: Original strand, 31679703 - 31679942
Alignment:
| Q |
94 |
tggttactctaaaaatatcaaaatcttcagacacacaagcccaggcttttacatcaaaatgatttttaacttctttctggttgtatataagttgagtgag |
193 |
Q |
| |
|
||||||| || |||| |||||| ||||| |||| |||| |||| ||||||||||||||| | | || ||| ||||| | ||||| | |||||||| || |
|
|
| T |
31679703 |
tggttaccctcaaaacatcaaactcttcggacagacaaacccaagcttttacatcaaaacgttcttgaacatctttatcattgtaaagaagttgagctag |
31679802 |
T |
|
| Q |
194 |
ggtcgttttaccgagacctcccatgcctgtaattgcgactacacctatattattattgtctgt------atctgatatcaacatattaactagttcctct |
287 |
Q |
| |
|
|| |||||||||| |||||||||||| ||||| || ||| ||||||| |||| | || |||||||| |||||||||| ||||| |||| |
|
|
| T |
31679803 |
ggctgttttaccgacacctcccatgccgaaaattgaaacaacattaatattatcattgacagtgctaacatctgatagcaacatattagttagtttctct |
31679902 |
T |
|
| Q |
288 |
ttatcatccttcctaccaaccgtgaaatattcatctacta |
327 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||| |||||||| |
|
|
| T |
31679903 |
ttatcactcttcctaccaaccatgaaagattgatctacta |
31679942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 658
Target Start/End: Original strand, 31680162 - 31680303
Alignment:
| Q |
517 |
aatcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttttaaatcattaagccattctcggacagccggatcatggatctgcttcat |
616 |
Q |
| |
|
|||| ||||| || ||||| ||||||||||| | |||||| ||||||||||| || |||| |||||||| | ||||| ||| | |||||||||| | |
|
|
| T |
31680162 |
aatcataactgatctggttgagcaaatcctcagcatcatatattgcatctttcaactcatcaagccattgtttgacaggaagattgttgatctgcttctt |
31680261 |
T |
|
| Q |
617 |
ctctgcatcaactagcaccgcttcaagagtgagaagtgttgt |
658 |
Q |
| |
|
||| |||||| | || || || | |||||||||||||||||| |
|
|
| T |
31680262 |
ctcagcatcatcaagaacagcatgaagagtgagaagtgttgt |
31680303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 676
Target Start/End: Original strand, 50226 - 50387
Alignment:
| Q |
515 |
ggaatcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttttaaatcattaagccattctcggacagccggatcatggatctgcttc |
614 |
Q |
| |
|
|||||| ||||| |||| | | ||||| ||||| | |||| ||| |||||||| || |||| ||||||| | |||||| |||| | |||||||||| |
|
|
| T |
50226 |
ggaatcataactgatttcgctgagcaagtcctcagcatcaaagacagcatctttcaagtcatcaagccatagtttgacagcaggattgttgatctgcttc |
50325 |
T |
|
| Q |
615 |
atctctgcatcaactagcaccgcttcaagagtgagaagtgttgtttgcaactgcttcaagag |
676 |
Q |
| |
|
||| |||||| | ||||| ||| |||||||||||||||||||| || |||| ||||||| |
|
|
| T |
50326 |
tcctcagcatcatccagcacaacttgaagagtgagaagtgttgttttcagctgcctcaagag |
50387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 568
Target Start/End: Original strand, 136313 - 136362
Alignment:
| Q |
519 |
tcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttt |
568 |
Q |
| |
|
|||||| | |||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
136313 |
tcgtaattgatttggttaagcaaatcctcagcatcatagattgcatcttt |
136362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 568
Target Start/End: Original strand, 146364 - 146413
Alignment:
| Q |
519 |
tcgtaactaatttggttcagcaaatcctctgtatcatagattgcatcttt |
568 |
Q |
| |
|
|||||| | |||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
146364 |
tcgtaattgatttggttaagcaaatcctcagcatcatagattgcatcttt |
146413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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