View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1574_low_5 (Length: 614)
Name: NF1574_low_5
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 72 - 595
Target Start/End: Original strand, 36150939 - 36151462
Alignment:
| Q |
72 |
ccaggattaagcacagttccacttgttccaacaacaccaactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaaca |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36150939 |
ccaggattaagcacagttccacttgttccaacaacaccagctggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaaca |
36151038 |
T |
|
| Q |
172 |
ttcttcaaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcacagctggtatcatcgccatcagg |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36151039 |
ttcttcaaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcagg |
36151138 |
T |
|
| Q |
272 |
ttccggagggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactc |
371 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151139 |
ttccggtgggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactc |
36151238 |
T |
|
| Q |
372 |
ttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacacaagccggtgatgatgctaggcttcaac |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151239 |
ttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacacaagccggtgatgatgctaggcttcaac |
36151338 |
T |
|
| Q |
472 |
tgaacgtcactacttatggtggcagtcaagttagtatggctaccggagcagtcaatgctaccgttaccggtactgtttataccgacagcaaacttgctat |
571 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151339 |
tgaacgtcactacttatggtggcagtcaagttagtatggctaccggagcagtcaatgctaccgttaccggtactgtttataccgacagcaaacttgctat |
36151438 |
T |
|
| Q |
572 |
ttatcaggttgataaggtacttat |
595 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
36151439 |
ttatcaggttgataaggtacttat |
36151462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 72 - 595
Target Start/End: Original strand, 36154325 - 36154848
Alignment:
| Q |
72 |
ccaggattaagcacagttccacttgttccaacaacaccaactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaaca |
171 |
Q |
| |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154325 |
ccaggattaagtacagttccgcttgttccaacaacaccaactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaaca |
36154424 |
T |
|
| Q |
172 |
ttcttcaaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcacagctggtatcatcgccatcagg |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36154425 |
ttcttcaaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcagg |
36154524 |
T |
|
| Q |
272 |
ttccggagggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactc |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154525 |
ttccggagggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactc |
36154624 |
T |
|
| Q |
372 |
ttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacacaagccggtgatgatgctaggcttcaac |
471 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154625 |
ttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacacaagccggtgatgatgctaggcttcaac |
36154724 |
T |
|
| Q |
472 |
tgaacgtcactacttatggtggcagtcaagttagtatggctaccggagcagtcaatgctaccgttaccggtactgtttataccgacagcaaacttgctat |
571 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154725 |
tgaacgtcactacttatggtggcagtcaagttagtatggctaccggagcagtcaatgctaccgttaccggtactgtttataccgacagcaaacttgctat |
36154824 |
T |
|
| Q |
572 |
ttatcaggttgataaggtacttat |
595 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
36154825 |
ttatcaggttgataaggtacttat |
36154848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 178 - 457
Target Start/End: Original strand, 5273544 - 5273832
Alignment:
| Q |
178 |
aaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcacagctggt---atcatcgccatcaggttc |
274 |
Q |
| |
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||||||| ||||| ||||| ||||| || ||||||||||||||||| || ||||| || |||||||||||||| || || |||||| |||||| ||| |
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| T |
5273544 |
aaaaagcaaaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagttacatcatcatcatcagattc |
5273643 |
T |
|
| Q |
275 |
c------ggagggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaa |
368 |
Q |
| |
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|| || |||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||| |
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| T |
5273644 |
tagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaa |
5273743 |
T |
|
| Q |
369 |
ctcttacagtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacacaagccggtgatga |
457 |
Q |
| |
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|| ||||| || ||| | ||| | |||||| | || || || |||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
5273744 |
ctgttacaattccacacactttcctcattcatctcaatctcgaacttcgacaccttaaccaacccggttcaaacacaagccggtgatga |
5273832 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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