View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1574_low_6 (Length: 581)
Name: NF1574_low_6
Description: NF1574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1574_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 16 - 565
Target Start/End: Complemental strand, 405351 - 404805
Alignment:
| Q |
16 |
agtatataccgtgtgtgttcattttgctttgagtatacatcaaaaatctaaattgagcatcaacagtgattacaccttacacattctaatacatgtctaa |
115 |
Q |
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| T |
405351 |
agtatataccgtgtgtgttcattttgctt-gagtatacatcaaaaatctaaattgagcatcaacagtgattacaccttacacattctaatacatgtcgaa |
405253 |
T |
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| Q |
116 |
caccaaaacagaactacaggaattacaggattacaactcatgtgtacccttcccttccctttctctgattatcttcagcccaaaatacctgccaaaatag |
215 |
Q |
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| T |
405252 |
caccaaaacagaactccaggaattacagggtcacaactcatgtgtacccttcccttccctttctctgattatcttcagcccaaaatacctgccaaaatag |
405153 |
T |
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| Q |
216 |
aatcacaaaacatgattaataatcactcattccacattaatcaaacaccaattcatatagctaccaaaactgaattgatcgatacacataaaagaaacta |
315 |
Q |
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| T |
405152 |
aatcacaaaacatgattaataatcactcattccacattaatcaaacaccaattcatatagctaccaaaactgaattgatcaatacaca--aaagaaacta |
405055 |
T |
|
| Q |
316 |
aaagtctcaccttccaagcatcattaatgtagcctgaggattagttccaggtgaaacactaaaaacagaaccatccacaattctaagagaatcaattcca |
415 |
Q |
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| T |
405054 |
aaagactcaccttccaagcatcattagtgtagcctgaggattagttccaggtgaaacactaaaaacagaaccatccacaattctaagagaatcaattcca |
404955 |
T |
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| Q |
416 |
atgaccttaagatgacgattaacaaccctaccaacaacacatccaccatgataatgccatatagtactaacagtccttctacaaaaatcagccatttcag |
515 |
Q |
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| T |
404954 |
atgaccttaagatgacgattaacaaccctaccaacaacacatccaccatgataatgccatatagtactaacagtccttttacaaaaatcagccatttcag |
404855 |
T |
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| Q |
516 |
cataatccgtttgatcattaggcaaagcaggtccaataaacctaaaatcc |
565 |
Q |
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| T |
404854 |
cataatccgtttgatcattaggcaaagcaggtccaataaacctaaaatcc |
404805 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 480
Target Start/End: Complemental strand, 3094336 - 3094292
Alignment:
| Q |
436 |
aacaaccctaccaacaacacatccaccatgataatgccatatagt |
480 |
Q |
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| T |
3094336 |
aacaaccctaccaacttgacaaccaccatgataatgccatatagt |
3094292 |
T |
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