View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1575-INSERTION-1 (Length: 113)
Name: NF1575-INSERTION-1
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1575-INSERTION-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 4e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 45725142 - 45725247
Alignment:
| Q |
8 |
acaatctcatacatccaacgtttccgtcaccgccacaaacctttaccatccaacaccatctccatcgcctcagaaaaacaaagtataatctccatgaaac |
107 |
Q |
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| T |
45725142 |
acaatctcatacatccaacgtttccgtcaccgccacaaacctttaccatccaacaccatctccatcgcctcagaaaaacaaaatataatctccatgaaac |
45725241 |
T |
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| Q |
108 |
caccta |
113 |
Q |
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|||||| |
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| T |
45725242 |
caccta |
45725247 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 45729385 - 45729436
Alignment:
| Q |
62 |
accatctccatcgcctcagaaaaacaaagtataatctccatgaaaccaccta |
113 |
Q |
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||||||||||||||| ||||||||| || |||||||||||||||||| |||| |
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| T |
45729385 |
accatctccatcgccccagaaaaactaaatataatctccatgaaacctccta |
45729436 |
T |
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