View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1575-INSERTION-2 (Length: 304)
Name: NF1575-INSERTION-2
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1575-INSERTION-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 3817209 - 3816917
Alignment:
| Q |
8 |
tattagtcatcgatgcctattctgttttttcgaagnnnnnnnngttctaaacctacatgtgaatttgttttttcggttatcgatgtcgtttgcaaatttt |
107 |
Q |
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| T |
3817209 |
tattagtcatcgatgcctattctgttttt-cgaagttttttttgttctaaacctacatgtgaatttgttttt-cggttattgatgtcgtttgtaaatttt |
3817112 |
T |
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| Q |
108 |
cgtttatccatatgccgtttgcaaatctttggttatcgattgcctatttgcctctaatttatccatgcttttgttttctttaatattgaagtgacaaaca |
207 |
Q |
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| T |
3817111 |
cgtttatccatgtgccgtttgcaaatctttggtcatcgattgcctatttgactctaatttatccatgcttttgttttctttaatattgaagtgacaaaca |
3817012 |
T |
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| Q |
208 |
tttgtgcatttaatttcggtcctcgatgtccatcgtgattaaatattgagtttgcatactttgacttttggaattgatgtgcctgtgtttattgt |
302 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3817011 |
tttgtgcatttaatttcagtcctcgatgtccatcctgattaaatattgagtttgcatactttgacttttggaattgatgtgcctgtgtttattgt |
3816917 |
T |
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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 31052194 - 31052295
Alignment:
| Q |
201 |
acaaacatttgtgcatttaatttcggtcctcgatgtccatcgtgattaaatattgagtttgcatactttgacttttggaattgatgtgcctgtgtttatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
31052194 |
acaaacatttgtgcatttaatttcggtcctcgatgtccatcttgattaaatattgagtttccatactttgacttttggaat--atgtgcctgtgtttatt |
31052291 |
T |
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| Q |
301 |
gtta |
304 |
Q |
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|||| |
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| T |
31052292 |
gtta |
31052295 |
T |
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