View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1575-INSERTION-4 (Length: 518)
Name: NF1575-INSERTION-4
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1575-INSERTION-4 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 2385664 - 2385375
Alignment:
| Q |
8 |
tctaggacatttccgcactttagtgtccaaactcaagttggtcgaaagctccacccactcgtccagtatgactaatgattccctatctcattatccaagt |
107 |
Q |
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| T |
2385664 |
tctaggacatttccgcactttagtgtccaaactcaagttggtcgaaagctccacccactcgtacagtatgactaatgattccctatctcattatccaagt |
2385565 |
T |
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| Q |
108 |
accaattgaagtattaaagtcacaaaaattaggggccacattcttaatatttccactaacatgttcaagcttcattttctgcagaattcaatccatattg |
207 |
Q |
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| T |
2385564 |
accaattgaagtattaaagtcacaaaaattaggggccacattcttaatatttccactaacatgttcaagcttcattttctgcagaattcattccatatta |
2385465 |
T |
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| Q |
208 |
gtgcaaaaatggaaaaataggtgggcaataacagcaaattcaacatttacaatgttcaatttttgttacttttgagtactcaagtcccca |
297 |
Q |
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| T |
2385464 |
gtgcaaaaatggaaaaataggtgggcaataacagcaaattcaacatttacaatgttcaatttttgttacttttgagtactcaagtcccca |
2385375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 296 - 518
Target Start/End: Complemental strand, 2385009 - 2384787
Alignment:
| Q |
296 |
cagtacaaataccttagcaataggttgcaagtgagttttcaaaatagaagaaaaccccgatggatcaataacaagtaaaattcctgactagtggctaatg |
395 |
Q |
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| T |
2385009 |
cagtacaaataccttagcaataggttgcaagtgagttttcaaaatagaagaaaaccccgatggatcaataacaagtaaaattcctgactagtggctaatg |
2384910 |
T |
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| Q |
396 |
gctacaatcattaagttgactcagattttaatgagattttcaaaccagttataatgcctttctcaaatagaaggtagaaaatccttccccttctcaacaa |
495 |
Q |
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| T |
2384909 |
gctacaatcattaagttgactcagattttaatgagattttcaaaccagttataatgcctttctcaaatagaacgtagaaaatccttccacttctcaacaa |
2384810 |
T |
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| Q |
496 |
tgtggtacatgaagaggtttata |
518 |
Q |
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| T |
2384809 |
tgtggtacatgaagaggtttata |
2384787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 17407879 - 17407826
Alignment:
| Q |
14 |
acatttccgcactttagtgtccaaactcaagttggtcgaaagctccacccactcg |
68 |
Q |
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| T |
17407879 |
acatttccgcactttagtgtccaaactcaagttgattg-aagctccatccactcg |
17407826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 16505056 - 16505094
Alignment:
| Q |
11 |
aggacatttccgcactttagtgtccaaactcaagttggt |
49 |
Q |
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| T |
16505056 |
aggacgtttccgcactttagtttccaaactcaagttggt |
16505094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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