View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1575-INSERTION-5 (Length: 185)
Name: NF1575-INSERTION-5
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1575-INSERTION-5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 9e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 40616387 - 40616212
Alignment:
| Q |
7 |
aaatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatcatatctctttaagtgt |
106 |
Q |
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| T |
40616387 |
aaatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatcatatctc-ttaagtgt |
40616289 |
T |
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| Q |
107 |
ttataattttaagtcaaatacttgaatatcctttgcannnnnnnacattcttgcttctttagattttttaattgatgag |
185 |
Q |
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| T |
40616288 |
ttataattttaagtcaaatacttaaatatcctttgca--tttatacattcttacttctttagattttttaattgatgag |
40616212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 7990250 - 7990425
Alignment:
| Q |
8 |
aatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatcatatctctttaagtgtt |
107 |
Q |
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| T |
7990250 |
aatttgaaatcatgttgtaggaattatcttaatctatgatatcatctatgatgtgggagtgctataatgaaatctttgttatcatatctctttaagtgct |
7990349 |
T |
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| Q |
108 |
tataattttaagtcaaatacttgaatatcctttgcannnnnnnacattcttgcttctttagattttttaattgatgag |
185 |
Q |
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| T |
7990350 |
taaaattttaagtcaaatacttgaatatcctttgca--tatttacattcttacttctttagatttttcaattgatgag |
7990425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 6e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 6e-45
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 5032071 - 5032245
Alignment:
| Q |
8 |
aatttgaaatcatgttgtaggaattatcttaatctatgatatcgtctatgatgtgggagtgctataatgaagtctttgttatcatatctctttaagtgtt |
107 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||| |||||||| | ||||||| | |
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| T |
5032071 |
aatttaaaatcatgttgtagaaattatcttaatctatgatattatccatgatgtgggagtgttatgatgaagtctttgtcatcatatc-ccttaagtgct |
5032169 |
T |
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| Q |
108 |
tataattttaagtcaaatacttgaatatcctttgcannnnnnnacattcttgcttctttagattttttaattgatgag |
185 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |
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| T |
5032170 |
taaaattttaagtcaaatacttgaatatcctttgca--tttttacattcatgcttctttagatttttcaattgatgag |
5032245 |
T |
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