View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1575-INSERTION-6 (Length: 300)
Name: NF1575-INSERTION-6
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1575-INSERTION-6 |
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| [»] scaffold0500 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0500 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0500
Description:
Target: scaffold0500; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 4043 - 3752
Alignment:
| Q |
7 |
aaaaagagctcaacacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagtttttgctttgatgtatgcttgaattctttctcaaaaa |
106 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4043 |
aaaaagagctcaacgcaaaagagcaatttttagaaccttgaaacaaactgaaaatgagagagcttttgctttgatgtatgcttgaattctttctcaaaaa |
3944 |
T |
|
| Q |
107 |
ttcggtgattgagcttatgccaagagcttggtatttataggcaaataaaattgcatcttggttgccacctattgcatgaggagcgtgtgtctcattcctg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
3943 |
ttcggtgattgagcttatgccaagagcttggtatttataggcaaataaaattgcatcttgcttgccacctattgcatgaggagcgtgtgtcttattcctg |
3844 |
T |
|
| Q |
207 |
ttctttctttctttacgtttgcaaattttccatggtctcacatgtgcacaattagccaacaagaaagaaccttgttttagtttctatccatt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3843 |
ttctttctttctttacgtttgcaaattttccatggtcccacatgtgcacaattagccaacaagaaagaaccttgttttagtttctatccatt |
3752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 21759482 - 21759190
Alignment:
| Q |
7 |
aaaaagagctcaacacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagtttttgctttgatgtatgcttgaattctttctcaaaaa |
106 |
Q |
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||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21759482 |
aaaaagagctcaacagaaa-gagcaatttttagaacactggaacaaactgaaaatgagagagcttttgctttgatgtatgcttgaattctttctcaaaaa |
21759384 |
T |
|
| Q |
107 |
ttcggtgattgagcttatgccaagagcttggtatttataggcaaataaaattgcatcttggttgccacctattgcatgaggagcgtgtgtctcattcctg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
21759383 |
ttcggtgattgagcttatgccaagagcttggtatttataggcaaataaaattgcatcttgcttgccacatattgcatgaggagcgtgtgtctcattcctg |
21759284 |
T |
|
| Q |
207 |
ttctttctttctttacgtttgcaaattttccatggtctcacatgtgcacaattagccaacaagaaagaaccttgttttagtttctatccattca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21759283 |
ttctttctttctttacgtttgcaaattttccatggtcccacatgtgcacaattagccaacaagaaagaaccttgttttagtttctatccattca |
21759190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 24989366 - 24989074
Alignment:
| Q |
7 |
aaaaagagctcaacacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagtttttgctttgatgtatgcttgaattctttctcaaaaa |
106 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24989366 |
aaaaagagctcaaaacaaaaaagcaatttttagaacactgaaacaaactaaaaatgagagagcttttgctttgatgtatgcttgaattctttctcaaaaa |
24989267 |
T |
|
| Q |
107 |
ttcggtgattgagcttatgccaagagcttggtatttataggcaaataaaattgcatcttggttgccacctattgcatgaggagcgtgtgtctcattcctg |
206 |
Q |
| |
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|| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
24989266 |
tttggtgct-gagcttatgccaagagcttggtatttataggcaaataaaattgcatcttgcttgccacctattgcatgaggagcgtgtgtctcatgcctg |
24989168 |
T |
|
| Q |
207 |
ttctttctttctttacgtttgcaaattttccatggtctcacatgtgcacaattagccaacaagaaagaaccttgttttagtttctatccattca |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24989167 |
ttctttctttctttacgtttgcaaattttccatggttccagatgtgcacaattagccaacaagaaagaaccttgttttagttactatccattca |
24989074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 81969 - 81683
Alignment:
| Q |
14 |
gctcaacacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagtttttgctttgatgtatgcttgaattctttctcaaaaattcggtg |
113 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
81969 |
gctcaaaataaaagagcaatttttagaacactgaaacagactaaaaatgagagagcttttgctttgatgtatgcttgaattctttcttaaaaattcggtg |
81870 |
T |
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| Q |
114 |
attgagcttatgccaagagcttggtatttataggcaaataaaattgcatcttggttgccacctattgcatgaggagcgtgtgtctcattcctgttctttc |
213 |
Q |
| |
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| ||| || | |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
81869 |
catttccttcagctgatagcttggtatttataggcaaataaaattgcatcttgcttgccacctattgcataaggagcgtgtgtctcattcctgttctttc |
81770 |
T |
|
| Q |
214 |
tttctttacgtttgcaaattttccatggtctcacatgtgcacaattagccaacaagaaagaaccttgttttagtttctatccattca |
300 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
81769 |
tttcattatgtttgcaaattttccatggtcccacatgtgcacaattagccaacaagaaagaaccttgttttagtttctatccattca |
81683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 32748323 - 32748429
Alignment:
| Q |
7 |
aaaaagagctcaacacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagtttttgctttgatgtatgcttgaattctttctcaaaaa |
106 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
32748323 |
aaaaagagctcaaaacaaaagagcaatttttagaacactgaaacaaactaaaaatgagagagcttttgctttgatgtatgcttgaattctttctcaaaaa |
32748422 |
T |
|
| Q |
107 |
ttcggtg |
113 |
Q |
| |
|
||||||| |
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|
| T |
32748423 |
ttcggtg |
32748429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 19695392 - 19695286
Alignment:
| Q |
7 |
aaaaagagctcaacacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagtttttgctttgatgtatgcttgaattctttctcaaaaa |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19695392 |
aaaaagagctcaaaacaaaagagcaatttttagaacactgaaacaatctaaaaatgagagagcttttgctttgatgtatgcttgaattctttctcaaaaa |
19695293 |
T |
|
| Q |
107 |
ttcggtg |
113 |
Q |
| |
|
||||||| |
|
|
| T |
19695292 |
ttcggtg |
19695286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 8988906 - 8988800
Alignment:
| Q |
7 |
aaaaagagctcaacacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagtttttgctttgatgtatgcttgaattctttctcaaaaa |
106 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8988906 |
aaaaatagctcagaacaaaagagcaatttttagaacactgaaacaatctaaaaatgagagagcttttgctttgatgtatgcttgaattctttctcaaaaa |
8988807 |
T |
|
| Q |
107 |
ttcggtg |
113 |
Q |
| |
|
||||||| |
|
|
| T |
8988806 |
ttcggtg |
8988800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 9004188 - 9004082
Alignment:
| Q |
7 |
aaaaagagctcaacacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagtttttgctttgatgtatgcttgaattctttctcaaaaa |
106 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9004188 |
aaaaatagctcagaacaaaagagcaatttttagaacactgaaacaatctaaaaatgagagagcttttgctttgatgtatgcttgaattctttctcaaaaa |
9004089 |
T |
|
| Q |
107 |
ttcggtg |
113 |
Q |
| |
|
||||||| |
|
|
| T |
9004088 |
ttcggtg |
9004082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 9013353 - 9013247
Alignment:
| Q |
7 |
aaaaagagctcaacacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagtttttgctttgatgtatgcttgaattctttctcaaaaa |
106 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9013353 |
aaaaatagctcagaacaaaagagcaatttttagaacactgaaacaatctaaaaatgagagagcttttgctttgatgtatgcttgaattctttctcaaaaa |
9013254 |
T |
|
| Q |
107 |
ttcggtg |
113 |
Q |
| |
|
||||||| |
|
|
| T |
9013253 |
ttcggtg |
9013247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 14916736 - 14916633
Alignment:
| Q |
7 |
aaaaagagctcaacacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagtttttgctttgatgtatgcttgaattctttctcaaaaa |
106 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| | ||| ||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
14916736 |
aaaaagtgctcagaacaaaagagcaatttttagaacactaagacagactaaaattgagagagcttttgctttgatgtatgcttggattctttctcaaaaa |
14916637 |
T |
|
| Q |
107 |
ttcg |
110 |
Q |
| |
|
|||| |
|
|
| T |
14916636 |
ttcg |
14916633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 13932968 - 13932901
Alignment:
| Q |
7 |
aaaaagagctcaacacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagtttttg |
74 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
13932968 |
aaaaatagcttaaaacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagcttttg |
13932901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 13951693 - 13951632
Alignment:
| Q |
7 |
aaaaagagctcaaca-caaaagagcaatttttagaacactgaaacaaactgaaaatgagaga |
67 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
13951693 |
aaaaagagctcaaaaacaaaagagcaatttttagaatactgaaacaaagtaaaaatgagaga |
13951632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 19667333 - 19667400
Alignment:
| Q |
7 |
aaaaagagctcaacacaaaagagcaatttttagaacactgaaacaaactgaaaatgagagagtttttg |
74 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| | ||||||| |||||||||||| ||||| |
|
|
| T |
19667333 |
aaaaagagctcaacacaaaagagaaatttttagaacactaagacaaactaaaaatgagagagcttttg |
19667400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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