View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1575-INSERTION-9 (Length: 391)
Name: NF1575-INSERTION-9
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1575-INSERTION-9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 7 - 190
Target Start/End: Complemental strand, 31372241 - 31372058
Alignment:
| Q |
7 |
agtttgaaacgtaaccatgtcaaccagctattgtagatagttcattatgtccggttaatcttgcactgtcacagttatggagtctgtcccaccataactg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31372241 |
agtttgaaacgtaaccatgtcaaccagctgttgtagatagttcattatgtccagttaatcttgcactgtcacagttatggagtctgtcccaccacaactg |
31372142 |
T |
|
| Q |
107 |
tgtcggttttgaactccatgatctctcttgagcaataattttatgtcaacattactattgaaacaccatatagtgttgagaaag |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31372141 |
tgtcggttttgaactccatgatctctcttgagcaataatttgatgtcaacattactattgaaacaccatatagtgttgagaaag |
31372058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 218 - 391
Target Start/End: Complemental strand, 31372031 - 31371858
Alignment:
| Q |
218 |
aattaaccaaaggtttgatctacatagagactaggatgcaagtttggtttatagtgaagatattacttttactaactcttgatttatgttaatacttttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31372031 |
aattaaccaaaggtttgatctacatagagactaggatgcaagtttgatttatagtgaagatattacttttattaactcttgatttatgttaatacttttt |
31371932 |
T |
|
| Q |
318 |
cattgacataatagaactagtcttatgccataattcataattagttgaataatatagagcgtctaatagtatat |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
31371931 |
cattgacataatagaactagtcttatgccataattcataatcagttgaataatatagagtgtctaatagtatat |
31371858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University