View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15750_low_1 (Length: 490)
Name: NF15750_low_1
Description: NF15750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15750_low_1 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Original strand, 110853 - 111312
Alignment:
| Q |
17 |
acaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcgcaggaaattatcggagaataatagcgattttcaaca |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110853 |
acaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcgcaggaaattatcggagaataatagcgattttcaaca |
110952 |
T |
|
| Q |
117 |
agatcacagtcatgatgcaatggaagttacctcacattggctacttggcttttctttagattataggatatcctattattgttttttagcttattttaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110953 |
agatcacagtcatgatgcaatggaagttacctcacattggctacttggcttttctttagattataggatatcctattattgttttttagcttattttaat |
111052 |
T |
|
| Q |
217 |
atttgtagtcaatctaatgatactttgtacttatttaagatttatatgtaactctaaaacacttgttctggttttcaaatttgtttccatcaatggattt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111053 |
atttgtagtcaatctaatgatactttgtacttatttaagatttatatgtaactctaaaacacttgttctggttttcaaatttgtttccatcaatggattt |
111152 |
T |
|
| Q |
317 |
ggtttcatataaatcttaattttatgttattcttgaatagttatgatagtggattattttgtgtctttatgtggtgatgatgcttataattccttcggtg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111153 |
ggtttcatataaatcttaattttatgttattcttgaatagttatgacagtggattattttgtgtctttatgtggtgatgatgcttataattccttcggtg |
111252 |
T |
|
| Q |
417 |
atgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgagtattat |
476 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
111253 |
atgcaagtgtttttgtaaaatctgggagattataaggagcggctgtttggtgaatattat |
111312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 48772411 - 48772453
Alignment:
| Q |
21 |
atggtatggtaattggtcaagagattgtttgttcaaaggaggg |
63 |
Q |
| |
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|||||| ||||||||||||||||||| |||||| ||||||||| |
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| T |
48772411 |
atggtagggtaattggtcaagagattctttgtttaaaggaggg |
48772453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Complemental strand, 20647013 - 20646554
Alignment:
| Q |
17 |
acaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcgcaggaaattatcggagaataatagcgattttcaaca |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
20647013 |
acaaatggtatgataattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcgcaggaaattatcggaaaataatagcgattttcaaca |
20646914 |
T |
|
| Q |
117 |
agatcacagtcatgatgcaatggaagttacctcacattggctacttggcttttctttagattataggatatcctattattgttttttagcttattttaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20646913 |
agatcacagtcatgatgcaatggaagttacctcacattggctacttggcttttctttagattataggatatcctattattgttttttagcttattttaat |
20646814 |
T |
|
| Q |
217 |
atttgtagtcaatctaatgatactttgtacttatttaagatttatatgtaactctaaaacacttgttctggttttcaaatttgtttccatcaatggattt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20646813 |
atttgtagtcaatctaatgatactttgtacttatttaagatttatatgtaactctaaaacgcttgttctggttttcaaatttgtttccatcaatggattt |
20646714 |
T |
|
| Q |
317 |
ggtttcatataaatcttaattttatgttattcttgaatagttatgatagtggattattttgtgtctttatgtggtgatgatgcttataattccttcggtg |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20646713 |
ggtttcatataaatcttaattttatgttattcttgaatagttatgacagtggattattttgtgtctttatgtggtgatgatgcttataattccttcggtg |
20646614 |
T |
|
| Q |
417 |
atgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgagtattat |
476 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
20646613 |
atgcaagtgtttttgtaaaatctgggagattataaggagcggctgtttggtgaatattat |
20646554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 19329081 - 19329124
Alignment:
| Q |
20 |
aatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
63 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
19329081 |
aatggtatggtaattggtcaagagattctttgttcaaaggaggg |
19329124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 301 - 478
Target Start/End: Original strand, 1415 - 1592
Alignment:
| Q |
301 |
ttccatcaatggatttggtttcatataaatcttaattttatgttattcttgaatagttatgatagtggattattttgtgtctttatgtggtgatgatgct |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | |||||||| ||||||||||| ||| || | ||||||||| || |||||||||| | |
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| T |
1415 |
ttccatcaatggatttggtttcatgtaaatcttaattttcttttattcttcaatagttatgacagtaagttctgttgtgtcttcatacggtgatgatgat |
1514 |
T |
|
| Q |
401 |
tataattccttcggtgatgcaagtgttcttgtaaaatctgggagattataaggagcggctgtttggtgagtattatct |
478 |
Q |
| |
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||| |||||| | || || |||||| ||||||||||||| |||||||||||||| ||| | |||||| |||||||| |
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| T |
1515 |
tatctttcctttgctgctgagagtgtttttgtaaaatctggaagattataaggagctgctatgtggtgaatattatct |
1592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 44886097 - 44886051
Alignment:
| Q |
17 |
acaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
63 |
Q |
| |
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||||| |||||| ||||||||||||| ||| |||||||||||||||| |
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| T |
44886097 |
acaaacggtatgataattggtcaagaaattctttgttcaaaggaggg |
44886051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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