View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15750_low_4 (Length: 228)

Name: NF15750_low_4
Description: NF15750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15750_low_4
NF15750_low_4
[»] chr2 (3 HSPs)
chr2 (84-221)||(31120373-31120510)
chr2 (84-150)||(15587970-15588036)
chr2 (158-203)||(18581032-18581077)
[»] chr1 (5 HSPs)
chr1 (6-84)||(44516719-44516797)
chr1 (84-153)||(32175873-32175942)
chr1 (84-153)||(9371727-9371796)
chr1 (157-201)||(33048756-33048800)
chr1 (34-84)||(8017764-8017814)
[»] chr4 (5 HSPs)
chr4 (6-84)||(16668466-16668544)
chr4 (6-83)||(36575061-36575138)
chr4 (157-202)||(4459096-4459141)
chr4 (84-153)||(14032493-14032562)
chr4 (127-182)||(14091415-14091473)
[»] chr6 (4 HSPs)
chr6 (84-201)||(18617166-18617286)
chr6 (34-84)||(21133709-21133759)
chr6 (84-153)||(31474018-31474087)
chr6 (158-218)||(29530791-29530851)
[»] chr5 (2 HSPs)
chr5 (157-203)||(14539143-14539189)
chr5 (158-203)||(41871343-41871388)
[»] chr7 (3 HSPs)
chr7 (158-203)||(12383030-12383075)
chr7 (84-153)||(15678681-15678750)
chr7 (84-136)||(10699381-10699433)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 221
Target Start/End: Original strand, 31120373 - 31120510
Alignment:
Q  84 tattaataatatatagaatgaggagtatttgatatacggtattttggggtgtcaacatagttgagatgtccgccataactaatgcatgtaacattcatcg 183  Q
    |||||||||||||||| |||||| |||||||| | ||||||||| |  |||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  31120373 tattaataatatataggatgaggggtatttgacacacggtatttagaagtgtcaacatagttgagatgtccgccataactaatgcatgtagcattcatca 31120472  T
Q  184 tttatcagaagaagaaaaaagattatgatgaaataata 221  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  31120473 tttatcagaagaagaaaaaaaattatgatggaataata 31120510  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 15587970 - 15588036
Alignment:
Q  84 tattaataatatatagaatgaggagtatttgatatacggtattttggggtgtcaacatagttgagat 150  Q
    |||||||||||||||| |||||| | |||||||| | | | ||||| ||||||||||||||||||||    
T  15587970 tattaataatatataggatgaggtgcatttgatacatgatgttttgtggtgtcaacatagttgagat 15588036  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 18581077 - 18581032
Alignment:
Q  158 ataactaatgcatgtaacattcatcgtttatcagaagaagaaaaaa 203  Q
    ||||||||| |||||  |||||||| ||||||||||||||||||||    
T  18581077 ataactaatacatgtctcattcatcatttatcagaagaagaaaaaa 18581032  T

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Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 44516719 - 44516797
Alignment:
Q  6 aatggaaaacagaataggaaatgccagctcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcct 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44516719 aatggaaaacagaataggaaatgccagctcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcct 44516797  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 32175942 - 32175873
Alignment:
Q  84 tattaataatatatagaatgaggagtatttgatatacggtattttggggtgtcaacatagttgagatgtc 153  Q
    ||||||||||||||||||||||| |||||||| | ||  ||||||||||||||| ||||| || ||||||    
T  32175942 tattaataatatatagaatgaggtgtatttgacaaacaatattttggggtgtcagcatagctgggatgtc 32175873  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 9371796 - 9371727
Alignment:
Q  84 tattaataatatatagaatgaggagtatttgatatacggtattttggggtgtcaacatagttgagatgtc 153  Q
    |||||||||||||||| |||||| |||||||| | ||| ||||||||||||  | |||||||| ||||||    
T  9371796 tattaataatatataggatgaggtgtatttgacacacgatattttggggtgctagcatagttgggatgtc 9371727  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 33048800 - 33048756
Alignment:
Q  157 cataactaatgcatgtaacattcatcgtttatcagaagaagaaaa 201  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||    
T  33048800 cataactaatgcatgtatcattcatcatttatcagaagaaaaaaa 33048756  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 8017764 - 8017814
Alignment:
Q  34 tcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcct 84  Q
    ||||||||||||||| ||||||||||||||||||   |||| |||||||||    
T  8017764 tcattcgcgggatacacacgagaattctctcgtgtcgttcaacattttcct 8017814  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 16668466 - 16668544
Alignment:
Q  6 aatggaaaacagaataggaaatgccagctcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcct 84  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16668466 aatggaaaacagaataggaaataccatctcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcct 16668544  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 36575138 - 36575061
Alignment:
Q  6 aatggaaaacagaataggaaatgccagctcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcc 83  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36575138 aatggaaaacggaatagaaaatgccagctcattcgcgggatacgcacgagaattctctcgtgcacttcaacattttcc 36575061  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 4459096 - 4459141
Alignment:
Q  157 cataactaatgcatgtaacattcatcgtttatcagaagaagaaaaa 202  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||    
T  4459096 cataactaatgcatgtgtcattcatcgtttatcagaagaagaaaaa 4459141  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 14032562 - 14032493
Alignment:
Q  84 tattaataatatatagaatgaggagtatttgatatacggtattttggggtgtcaacatagttgagatgtc 153  Q
    |||||||||||||||| |||||| |||||||| | ||  |||||||||||| || |||||||| ||||||    
T  14032562 tattaataatatataggatgaggtgtatttgacacacaatattttggggtgccagcatagttgggatgtc 14032493  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 14091415 - 14091473
Alignment:
Q  127 ttggggtgtcaacatagttgagatgtc---cgccataactaatgcatgtaacattcatc 182  Q
    |||||||| |||||||| |||||||||   |||||||||||||||||||  ||||||||    
T  14091415 ttggggtgccaacatagctgagatgtcaaccgccataactaatgcatgtctcattcatc 14091473  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 18617166 - 18617286
Alignment:
Q  84 tattaataatatatagaatgaggagtatttgatatacggtattttggggtgtcaacatagttgagatgt---ccgccataactaatgcatgtaacattca 180  Q
    |||||||||||||||| |||||| |||||||| | ||  |||||||||||| |||||||  || |||||   | ||||||||||||||||||  ||||||    
T  18617166 tattaataatatataggatgaggtgtatttgacacacaatattttggggtgccaacataactgggatgtcaactgccataactaatgcatgtctcattca 18617265  T
Q  181 tcgtttatcagaagaagaaaa 201  Q
    || ||||| ||||||| ||||    
T  18617266 tcatttattagaagaaaaaaa 18617286  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 21133759 - 21133709
Alignment:
Q  34 tcattcgcgggatacgcacgagaattctctcgtgcacttcagcattttcct 84  Q
    ||||||||||||||| ||||||||||||||||||   ||||||||||||||    
T  21133759 tcattcgcgggatacacacgagaattctctcgtgtcgttcagcattttcct 21133709  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 31474087 - 31474018
Alignment:
Q  84 tattaataatatatagaatgaggagtatttgatatacggtattttggggtgtcaacatagttgagatgtc 153  Q
    |||||||||||||||| |||||| |||||||| | ||  |||||||||||| || ||||| || ||||||    
T  31474087 tattaataatatataggatgaggtgtatttgacacacaatattttggggtgccagcatagctgggatgtc 31474018  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 29530851 - 29530791
Alignment:
Q  158 ataactaatgcatgtaacattcatcgtttatcagaagaagaaaaaagattatgatgaaata 218  Q
    ||||| ||| |||||  |||||||  |||||||||||||||||||| ||||||||| ||||    
T  29530851 ataacaaatacatgtctcattcattatttatcagaagaagaaaaaaaattatgatgtaata 29530791  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 14539143 - 14539189
Alignment:
Q  157 cataactaatgcatgtaacattcatcgtttatcagaagaagaaaaaa 203  Q
    ||||||||||| ||||  |||||||| ||||||||||||||||||||    
T  14539143 cataactaatgtatgtgtcattcatcttttatcagaagaagaaaaaa 14539189  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 41871343 - 41871388
Alignment:
Q  158 ataactaatgcatgtaacattcatcgtttatcagaagaagaaaaaa 203  Q
    ||||||||| |||||  |||||||| ||||||||||||||||||||    
T  41871343 ataactaatacatgtctcattcatcatttatcagaagaagaaaaaa 41871388  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 12383030 - 12383075
Alignment:
Q  158 ataactaatgcatgtaacattcatcgtttatcagaagaagaaaaaa 203  Q
    ||||||||| |||||  |||||||||||||||||||||| ||||||    
T  12383030 ataactaatacatgtctcattcatcgtttatcagaagaaaaaaaaa 12383075  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 15678750 - 15678681
Alignment:
Q  84 tattaataatatatagaatgaggagtatttgatatacggtattttggggtgtcaacatagttgagatgtc 153  Q
    |||||||||||||||| |||||| |||||||| | ||  |||||||||||| || ||||| || ||||||    
T  15678750 tattaataatatataggatgaggtgtatttgacacacaatattttggggtgccagcatagctgggatgtc 15678681  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 10699381 - 10699433
Alignment:
Q  84 tattaataatatatagaatgaggagtatttgatatacggtattttggggtgtc 136  Q
    |||||||||||||||| |||||| |||||||| | ||  ||||||||||||||    
T  10699381 tattaataatatataggatgaggtgtatttgacacacaatattttggggtgtc 10699433  T

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