View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15751_high_2 (Length: 339)

Name: NF15751_high_2
Description: NF15751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15751_high_2
NF15751_high_2
[»] chr3 (3 HSPs)
chr3 (20-177)||(2782514-2782671)
chr3 (272-339)||(2782352-2782419)
chr3 (9-88)||(18973100-18973179)
[»] chr2 (1 HSPs)
chr2 (9-169)||(42048555-42048715)
[»] chr8 (2 HSPs)
chr8 (9-175)||(31180275-31180440)
chr8 (9-88)||(40530935-40531014)
[»] chr1 (1 HSPs)
chr1 (9-49)||(38564604-38564644)
[»] chr7 (2 HSPs)
chr7 (11-60)||(26231835-26231884)
chr7 (9-40)||(46262465-46262496)
[»] chr6 (1 HSPs)
chr6 (11-49)||(12128599-12128637)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 2782671 - 2782514
Alignment:
Q  20 tgcaattgtggtggatccagtctctggatggttggtggtttatctcctttacgatgaaagacggtacatcaagtagcttgatgttgctacgggatcactg 119  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| |||| |||| |||    
T  2782671 tgcaattgtggtggatccagtctttagatggttggtggtttatctcctttacgatgaaaggcggtacattaagtagcttgctgttggtacgagatcgctg 2782572  T
Q  120 tgcttcgggtgtttgcgtgtggtttctgtggatctctggtgttgttgttggggtgcgt 177  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  2782571 tgcttcgggtgtttgcgtgtggtttctgtggatctctagtggtgttgttggggtgcgt 2782514  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 2782419 - 2782352
Alignment:
Q  272 cctttggatgttttccctacgcgttctagggtttgtttgtagggattggtgatgttgttttgctgtct 339  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| || |||||    
T  2782419 cctttggatgttttccctacgcgttatggggtttgtttgtagggattggtgatgatgttatgttgtct 2782352  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 18973100 - 18973179
Alignment:
Q  9 gcaaagggtcgtgcaattgtggtggatccagtctctggatggttggtggtttatctcctttacgatgaaagacggtacat 88  Q
    ||||||||||||||| |||||||||||||||||| |||||| || | | ||| ||||||   ||| ||||||||||||||    
T  18973100 gcaaagggtcgtgcagttgtggtggatccagtctttggatgatttgagatttttctcctccgcgaagaaagacggtacat 18973179  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 42048715 - 42048555
Alignment:
Q  9 gcaaagggtcgtgcaattgtggtggatccagtctctggatggttggtggtttatctcctttacgatgaaagacggtacatcaagtagcttgatgttgcta 108  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||   ||||| |||| ||||  ||    
T  42048715 gcaaagggtcttgcagttgtggtggatccagtctctggatggttggtggtttatctccttcgcgatgaaagatggtacggtaagtatcttgttgtttgta 42048616  T
Q  109 cgggatcactgtgcttcgggtgtttgcgtgtggtttctgtggatctctggtgttgttgttg 169  Q
    |||| ||  ||||| | ||||||| ||||||||||| | ||||||||||||| ||||||||    
T  42048615 cggggtcgttgtgcgttgggtgttcgcgtgtggtttatatggatctctggtggtgttgttg 42048555  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 31180440 - 31180275
Alignment:
Q  9 gcaaagggtcgtgcaattgtggtggatccagtctctggatggttggtggtttatctcctttacgatgaaagacggtacatcaagtagcttgatgttgcta 108  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||||||| | |||||||  ||  |||||| ||||||  |||||||||| ||||| |     
T  31180440 gcaaagggtcgtgcagttgtggtggattcagtctttggatggttggtggtgtctctccttcgcgccgaaagaaggtacaataagtagcttgttgttggtt 31180341  T
Q  109 cgggatcactgtgcttcgggtgtttgcgtgtggtttctgtggatctctggtgttgttgttggggtgc 175  Q
     ||||| | |||||||  |||||||||| || |||| |||| |||| ||||| ||||| || |||||    
T  31180340 tgggataattgtgctttaggtgtttgcgagt-gtttatgtgaatctttggtggtgttggtgtggtgc 31180275  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 40530935 - 40531014
Alignment:
Q  9 gcaaagggtcgtgcaattgtggtggatccagtctctggatggttggtggtttatctcctttacgatgaaagacggtacat 88  Q
    ||||||||||||||| ||||||||||||||||| ||||||| || | | ||| |||||||  ||| ||||||||||||||    
T  40530935 gcaaagggtcgtgcagttgtggtggatccagtccctggatgatttgagatttttctccttcgcgaagaaagacggtacat 40531014  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 38564604 - 38564644
Alignment:
Q  9 gcaaagggtcgtgcaattgtggtggatccagtctctggatg 49  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  38564604 gcaaagggtcgtgcagttgtggtggatccagtctctggatg 38564644  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 26231835 - 26231884
Alignment:
Q  11 aaagggtcgtgcaattgtggtggatccagtctctggatggttggtggttt 60  Q
    |||||||||||   |||||||||||||||| |||||||||||||||||||    
T  26231835 aaagggtcgtgtggttgtggtggatccagtttctggatggttggtggttt 26231884  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 46262496 - 46262465
Alignment:
Q  9 gcaaagggtcgtgcaattgtggtggatccagt 40  Q
    ||||||||||||||||||||||||||||||||    
T  46262496 gcaaagggtcgtgcaattgtggtggatccagt 46262465  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 12128599 - 12128637
Alignment:
Q  11 aaagggtcgtgcaattgtggtggatccagtctctggatg 49  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  12128599 aaagggccgtgcagttgtggtggatccagtctctggatg 12128637  T

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