View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15752_high_3 (Length: 400)
Name: NF15752_high_3
Description: NF15752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15752_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 207 - 373
Target Start/End: Original strand, 47708215 - 47708377
Alignment:
| Q |
207 |
tgtaaataattgaaataatgaatgatacatcaatcaagtagataaaagtatttgatgagaaacttaaatcgaaagtcagaagcatctcatatttgatttt |
306 |
Q |
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| T |
47708215 |
tgtaaataattgaaataatgaatgatacatca----agtagataaaagtatttgatgagaaacttaagtcgaaaatcagaagcatctcacacttggtttt |
47708310 |
T |
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| Q |
307 |
ctcgattaaattctctttatgagtttaagttcttttaagaattggtgtattcaacgaatgtttgact |
373 |
Q |
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| T |
47708311 |
ctcgattagattttctttatgagtttaagtttttttaagaattgttgtattcaacgaatgtttgact |
47708377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 47708089 - 47708216
Alignment:
| Q |
1 |
tcattgaaattttatcacgcaacaaaattaatttctgttgttgtaagtaatatctcctgtccataagccattgcttcttaaatgatgggttgcttgctct |
100 |
Q |
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| T |
47708089 |
tcattgaaattttatcacacaacaaaattaatttctgttgttgtaagtaatatctcatgtcaataagccattgcttcttaaatgatgggttgcttgctct |
47708188 |
T |
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| Q |
101 |
ctctacttctttgttcgaatttaaaatg |
128 |
Q |
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| T |
47708189 |
ctctacttctttgttcgaattgaaaatg |
47708216 |
T |
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