View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15752_high_4 (Length: 390)
Name: NF15752_high_4
Description: NF15752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15752_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 19123439 - 19123085
Alignment:
| Q |
17 |
cagagaaggagattccgtagaatttgacgctgcttcgggtttactgagagaagaagaaggatgataattgattaaaccccaatcttcaagaaaatcaaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19123439 |
cagagaaggagattccgtagaatttgacgctgcttcggatttactgagagaagaagaaggatgataattgattaaaccccaatcttcaagaaaatcaaag |
19123340 |
T |
|
| Q |
117 |
actcttcgaatggaaccaacatcaccgactagggttttgcgaacatcggtgaaggtgatttttctgttagggttgaatctgaaaaacttgacgatagagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19123339 |
actcttcgaatggaaccaacatcaccgactagggttttgcgaacatcggtgaaggtgatttttctgttagggttgaatctgaaaaacttgacgatagagt |
19123240 |
T |
|
| Q |
217 |
ttctgtagtatttgtaaaccctagggttcttagaagattcgggaatgttacggatttcacattcgtgaatggaatcccatgagaaccatcttgagtggct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19123239 |
ttctgtagtatttgtaaaccctagggttcttagaagattcgggaatgttacggatttcacattcgtgaatggaatcccatgagaaccatcttgagtggct |
19123140 |
T |
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| Q |
317 |
agggacaaggatcaagttgccgtcgctagaggttttgggtttcggcggtgtttcc |
371 |
Q |
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| T |
19123139 |
agggacaaggatcaagttgccgtcgctagaggttttgggtttcggcggtgtttcc |
19123085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 54 - 354
Target Start/End: Original strand, 54293618 - 54293918
Alignment:
| Q |
54 |
ggtttactgagagaagaagaaggatgataattgattaaaccccaatcttcaagaaaatcaaagactcttcgaatggaaccaacatcaccgactagggttt |
153 |
Q |
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| T |
54293618 |
ggtttactgagcgaagaagaaggatgataattgattaaaccccaagcttcaagaaaatcaaacactcttcgaatggaaccaacgtcaccgactagggttt |
54293717 |
T |
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| Q |
154 |
tgcgaacatcggtgaaggtgatttttctgttagggttgaatctgaaaaacttgacgatagagtttctgtagtatttgtaaaccctagggttcttagaaga |
253 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54293718 |
tgcgaacatcggtgaaggtgattttcctgttaggattgaatctgaaaaacttgacaatagagtttctgtagtatttgtaaaccctagggttcttggaaga |
54293817 |
T |
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| Q |
254 |
ttcgggaatgttacggatttcacattcgtgaatggaatcccatgagaaccatcttgagtggctagggacaaggatcaagttgccgtcgctagaggttttg |
353 |
Q |
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| T |
54293818 |
ttcgggaatgttgcggatttcgcattcgtgaatggaatcccacgagaaccatcttgagtggctagggacaaggattaagttggcgtcgctagaggttttg |
54293917 |
T |
|
| Q |
354 |
g |
354 |
Q |
| |
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| |
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| T |
54293918 |
g |
54293918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 54 - 357
Target Start/End: Complemental strand, 36753038 - 36752735
Alignment:
| Q |
54 |
ggtttactgagagaagaagaaggatgataattgattaaaccccaatcttcaagaaaatcaaagactcttcgaatggaaccaacatcaccgactagggttt |
153 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| | ||| |
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| T |
36753038 |
ggtttactgagcgaagaagaaggatgataattgattaaaccccaagcttcaagaaaatcaaagactcttcgaatggaaccaacgtcaccgactatgattt |
36752939 |
T |
|
| Q |
154 |
tgcgaacatcggtgaaggtgatttttctgttagggttgaatctgaaaaacttgacgatagagtttctgtagtatttgtaaaccctagggttcttagaaga |
253 |
Q |
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|||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36752938 |
tgcgaacatctgtgaatgtgatttttctgttgggattgaatctgaaaaacttgacgatagagtttctgtagtatttgtaaaccctagggttcttggaaga |
36752839 |
T |
|
| Q |
254 |
ttcgggaatgttacggatttcacattcgtgaatggaatcccatgagaaccatcttgagtggctagggacaaggatcaagttgccgtcgctagaggttttg |
353 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| || |
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| T |
36752838 |
ttcgggaatgttacggatttcgcattcgtgaatggaatcccatgagaaccatcttgagtggctagggacaaggattaagttggcgtcgctcgaggttatg |
36752739 |
T |
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| Q |
354 |
ggtt |
357 |
Q |
| |
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|||| |
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| T |
36752738 |
ggtt |
36752735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 36753105 - 36753073
Alignment:
| Q |
17 |
cagagaaggagattccgtagaatttgacgctgc |
49 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
36753105 |
cagagaaggagattccgtagaatttgacgctgc |
36753073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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