View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15752_low_1 (Length: 481)
Name: NF15752_low_1
Description: NF15752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15752_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 2 - 467
Target Start/End: Complemental strand, 45270710 - 45270245
Alignment:
| Q |
2 |
gggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
45270710 |
gggttcattggaaaggcaatgacatttgagaacacagccggtcctgccggtatgcaagctgtggcatttagaaacataggagatatgtctgctttggtgg |
45270611 |
T |
|
| Q |
102 |
gttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaactgtgttatctccggtaccattgacttcatctttgg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270610 |
gttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaactgtgttatctccggtaccattgacttcatctttgg |
45270511 |
T |
|
| Q |
202 |
aacatctgctaccttgatccaaagctctaccatcatcgtgagaaaaggcaattatgataaaaatgaatacaacgtaattgtcgcagacggatcaccgcag |
301 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |
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| T |
45270510 |
aacatctgccaccttgatccaaagctctaccatcatcgtgagaaaaggcaattatgatcataatgaatacaacgtaattgtcgcagacggatcaccgctg |
45270411 |
T |
|
| Q |
302 |
gtgaatatgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagac |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
45270410 |
gtgaatatgaatactggtattgttatccaggactgcaatatcatcccagaagcagcattggtccctgaaaaattcacagttaggtcttacttgggcagac |
45270311 |
T |
|
| Q |
402 |
catggaagaatgaatcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatg |
467 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
45270310 |
catggcaaaatgaatcaaaggcagtcatcatggaatccacaattggtgattttattcatcaagatg |
45270245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 45274238 - 45273777
Alignment:
| Q |
1 |
agggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45274238 |
agggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagctgtggcatttagaaacgtaggagatatgtctgctttggtg |
45274139 |
T |
|
| Q |
101 |
ggttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaactgtgttatctccggt-accattgacttcatcttt |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| ||||||| ||||||||| | ||||||||| ||| || |||| ||| ||| |||||||||||||| |
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|
| T |
45274138 |
ggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctggtaaccgttgacttcatcttt |
45274039 |
T |
|
| Q |
200 |
ggaacatctgctaccttgatccaaagctctaccatcatcgtgagaaaaggcaattatgataaaaatgaatacaacgtaattgtcgcagacggatcaccgc |
299 |
Q |
| |
|
||| |||||||||||||||||||| |||||| ||||| || ||||| || || ||| ||| |||| |||| ||||||||||||| |
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|
| T |
45274038 |
ggatcatctgctaccttgatccaacactctacaatcattgtaagaaa--gc----ctggcaaagggcaattcaacacaattaccgcagacggatcagaca |
45273945 |
T |
|
| Q |
300 |
aggtgaatatgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcag |
399 |
Q |
| |
|
| ||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | || |||| |||||||||| |||||||||||||||| |
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|
| T |
45273944 |
cgatgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcag |
45273845 |
T |
|
| Q |
400 |
accatggaagaatgaatcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatg |
467 |
Q |
| |
|
|||||||||| || | ||||| | ||| ||||||||||||| ||||||||||| ||||||| ||||| |
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|
| T |
45273844 |
accatggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcatccagatg |
45273777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 467
Target Start/End: Complemental strand, 45282480 - 45282021
Alignment:
| Q |
2 |
gggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45282480 |
gggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgg |
45282381 |
T |
|
| Q |
102 |
gttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaactgtgttatctccggtaccattgacttcatctttgg |
201 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| ||||||| |||||| || | ||||||||| ||| || |||| |||||| |||||||||||||||| |
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|
| T |
45282380 |
gttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacagacagtactaccgcaattgtcttgtctcgggtaccgttgacttcatctttgg |
45282281 |
T |
|
| Q |
202 |
aacatctgctaccttgatccaaagctctaccatcatcgtgagaaaaggcaattatgataaaaatgaatacaacgtaattgtcgcagacggatcaccgcag |
301 |
Q |
| |
|
| |||||||||||||||||||| |||||| ||||| || ||||| || || ||| ||| |||| |||| |||||||||||| | |
|
|
| T |
45282280 |
atcatctgctaccttgatccaacactctacaatcattgtaagaaa--gc----ctggcaaagggcaattcaacacaattactgcagacggatcagacacg |
45282187 |
T |
|
| Q |
302 |
gtgaatatgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagac |
401 |
Q |
| |
|
||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | || |||| |||||||||| |||||||||||||||||| |
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|
| T |
45282186 |
atgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagac |
45282087 |
T |
|
| Q |
402 |
catggaagaatgaatcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatg |
467 |
Q |
| |
|
|||||||| || | ||||| | ||| ||||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
45282086 |
catggaagtatttagcaaagactgtcgtcatggaatccaccattggtgatttcattcatccagatg |
45282021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 45293820 - 45293577
Alignment:
| Q |
2 |
gggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45293820 |
gggttcattggaaaggcaatgacatttgagaacacagccggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgg |
45293721 |
T |
|
| Q |
102 |
gttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaactgtgttatctccggtaccattgacttcatctttgg |
201 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
45293720 |
gttgccatatcctgggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattgtgttatctctggtaccgttgatttcatctttgg |
45293621 |
T |
|
| Q |
202 |
aacatctgctaccttgatccaaagctctaccatcatcgtgagaa |
245 |
Q |
| |
|
||||||||| |||||||||||| |||||| |||||||| |||| |
|
|
| T |
45293620 |
aacatctgccaccttgatccaagactctacgatcatcgtaagaa |
45293577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 45302780 - 45302537
Alignment:
| Q |
2 |
gggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
45302780 |
gggttcattggaaaggcaatgacatttgagaacacagccggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgg |
45302681 |
T |
|
| Q |
102 |
gttgccatatcgtaggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaactgtgttatctccggtaccattgacttcatctttgg |
201 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
45302680 |
gttgccatatcctgggttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattgtgttatctctggtaccgttgatttcatctttgg |
45302581 |
T |
|
| Q |
202 |
aacatctgctaccttgatccaaagctctaccatcatcgtgagaa |
245 |
Q |
| |
|
||||||||| |||||||||||| |||||| |||||||| |||| |
|
|
| T |
45302580 |
aacatctgccaccttgatccaagactctacgatcatcgtaagaa |
45302537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 309 - 467
Target Start/End: Complemental strand, 45293519 - 45293361
Alignment:
| Q |
309 |
tgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagaccatggaa |
408 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||| |||||||||||||||||| | ||| ||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45293519 |
tgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagaccatggaa |
45293420 |
T |
|
| Q |
409 |
gaatgaatcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatg |
467 |
Q |
| |
|
| | | ||||| | ||| ||||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
45293419 |
ggttttagcaaagacggtcgtcatggaatccaccattggtgattttattcatccagatg |
45293361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 309 - 467
Target Start/End: Complemental strand, 45302479 - 45302321
Alignment:
| Q |
309 |
tgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagaccatggaa |
408 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||| |||||||||||||||||| | ||| ||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45302479 |
tgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagaccatggaa |
45302380 |
T |
|
| Q |
409 |
gaatgaatcaaaggcagtcatcatggaatccacaattggtgatttgattcatcaagatg |
467 |
Q |
| |
|
| | | ||||| | ||| ||||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
45302379 |
ggttttagcaaagacggtcgtcatggaatccaccattggtgattttattcatccagatg |
45302321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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