View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15752_low_10 (Length: 238)
Name: NF15752_low_10
Description: NF15752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15752_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34964365 - 34964146
Alignment:
| Q |
1 |
tagtttttctatttaaaacaccaacatatattggttctcacattttcaaaaacaaaccattcaatcatggctacgaatatttctcaatgcatattgtttt |
100 |
Q |
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| T |
34964365 |
tagtttttctatttaaaacaccaacatatattggttctcacattttcaaaaacaaaccattcaatcatggctaccaatatttctcaatgcatattgtttt |
34964266 |
T |
|
| Q |
101 |
cctacattacattccttcacctcattttcatcacattagctcaatatgataactatatcatccacatgaacttatcagccatgcccaaagcattctcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34964265 |
cctacattacattccttcacctcattttcatcacattagctcaatatgataactatatcatccacatgaacttatcagccatgcccaaagcattctcaac |
34964166 |
T |
|
| Q |
201 |
tcatcacacatggtatcatt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
34964165 |
tcatcacacatggtatcatt |
34964146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 8956549 - 8956687
Alignment:
| Q |
77 |
atatttctcaatgcatattgttttcctacattacattccttcacctcattttcatcacattagctcaatatgataactatatcatccacatgaacttatc |
176 |
Q |
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||||||||||||||||| |||| || | |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| || | | |
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| T |
8956549 |
atatttctcaatgcatagtgttctcttgcattacattccttcaccttcttttcatcacaatagctcaatctgataactatatcatccacatggacaaagc |
8956648 |
T |
|
| Q |
177 |
agccatgcccaaagcattctcaactcatcacacatggta |
215 |
Q |
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| T |
8956649 |
agccatgcccaaagtattcacaacccaccacacatggta |
8956687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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