View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15752_low_2 (Length: 459)
Name: NF15752_low_2
Description: NF15752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15752_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 32095485 - 32095061
Alignment:
| Q |
16 |
atcaagaaaggatttgatgcacacctccctctggagagcttcatcaagctcctgcttatcatcaggagtgatgtctttagcatacaattgagataaacag |
115 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32095485 |
atcaaaaaaggatttgatgctcacctccctctggagagcttcatcaagctcctgcttatcatcaggagtgatgtctttagcgtacaattgagataaacag |
32095386 |
T |
|
| Q |
116 |
ttccttaccctgtgaaaagaacnnnnnnngttcaattttcttatacattctgttcaaaactttattttaaaagaaaaatactacattatgaaacaaacct |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32095385 |
ttccttaccctgtgaaaagaacaaaaaaagttcaattttcttatacattctgttcaaaacttcattttaaaagaaaaatactacattatgaaacaaacct |
32095286 |
T |
|
| Q |
216 |
tccatgcttttgaagcaaagatcgacgaaccgactgagtaggatgagcagtaagaacaagatcaacggtctggttcttcaatgcatcaaaaacttcctga |
315 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095285 |
tccgtgcttttgaagcaaagatcgacgaaccgactgagtaggatgagcagtaagaacaagatcaacggtctggttcttcaatgcatcaaaaacttcctga |
32095186 |
T |
|
| Q |
316 |
ggagatttcttcatgtcaaacacaagtttcttgagagtttcctcaatgtcggattcagtggttgcattactctcatccctaaaatctcccttcttcaact |
415 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095185 |
ggagatttcttcatgtcaaacacgagtttcttgagagtttcctcaatgtcggattcagtggttgcattactctcatccctaaaatctcccttcttcaact |
32095086 |
T |
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| Q |
416 |
tgttccttcggcggtgcgcaatctg |
440 |
Q |
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| T |
32095085 |
tgttccttcggcggtgcgcaatctg |
32095061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 208 - 319
Target Start/End: Original strand, 39539882 - 39539993
Alignment:
| Q |
208 |
acaaaccttccatgcttttgaagcaaagatcgacgaaccgactgagtaggatgagcagtaagaacaagatcaacggtctggttcttcaatgcatcaaaaa |
307 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || || | |||||| || || ||||||| |||||||| | |
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| T |
39539882 |
acaaaccttccatgcttttgcagcaaagatcgacgaatcgactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaaga |
39539981 |
T |
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| Q |
308 |
cttcctgaggag |
319 |
Q |
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||||| |||||| |
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| T |
39539982 |
cttccagaggag |
39539993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 437
Target Start/End: Complemental strand, 22565246 - 22565020
Alignment:
| Q |
211 |
aaccttccatgcttttgaagcaaagatcgacgaaccgactgagtaggatgagcagtaagaacaagatcaacggtctggttcttcaatgcatcaaaaactt |
310 |
Q |
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|||||||||||||||||||||||||| | |||| || || || ||||||||||||||||| ||||||||||||||||| || | |||||||||||||| |
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| T |
22565246 |
aaccttccatgcttttgaagcaaagacctgcgaattgattgcgttggatgagcagtaagaacgagatcaacggtctggtttttaagtgcatcaaaaactt |
22565147 |
T |
|
| Q |
311 |
cctgaggagatttcttcatgtcaaacacaagtttcttgagagtttcctcaatgtcggattcagtggttgcattactctcatccctaaaatctcccttctt |
410 |
Q |
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||||||||| || |||| ||| |||||| |||| | |||||| || || || ||||| || |||||||| ||||||| |||||| ||||| || |
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| T |
22565146 |
cctgaggagtcttgttcaactcaccaacaagtctcttaatagtttcttcgatatctgattctgttgttgcattgttctcatcagcaaaatcacccttttt |
22565047 |
T |
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| Q |
411 |
caacttgttccttcggcggtgcgcaat |
437 |
Q |
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| T |
22565046 |
caacttaatccttcgacggtgagcaat |
22565020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 22565411 - 22565334
Alignment:
| Q |
37 |
cacctccctctggagagcttcatcaagctcctgcttatcatcaggagtgatgtctttagcatacaattgagataaaca |
114 |
Q |
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||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
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| T |
22565411 |
cacctccctttgtagagcctcatcgagctcctgcttatcatcaggagtgatgtctttggcatacaattgtgttaaaca |
22565334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 311
Target Start/End: Original strand, 30910319 - 30910422
Alignment:
| Q |
208 |
acaaaccttccatgcttttgaagcaaagatcgacgaaccgactgagtaggatgagcagtaagaacaagatcaacggtctggttcttcaatgcatcaaaaa |
307 |
Q |
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||||||||||| ||||| || | |||||||| ||||| ||||| |||||||||||||| || || | |||||| || ||| ||||||| |||||||| | |
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| T |
30910319 |
acaaaccttccgtgcttctgcaacaaagatctgcgaacagactgggtaggatgagcagttaggaccaaatcaacagtttggctcttcaaagcatcaaaga |
30910418 |
T |
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| Q |
308 |
cttc |
311 |
Q |
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|||| |
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| T |
30910419 |
cttc |
30910422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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