View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15752_low_5 (Length: 342)
Name: NF15752_low_5
Description: NF15752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15752_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 8656421 - 8656740
Alignment:
| Q |
18 |
ttacactcccattaaattataatcaattatatgtgtgacttacactataaaaacacggtccaattacatgagttatgaaaactgctactcatacaggtaa |
117 |
Q |
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| T |
8656421 |
ttacactcccattaaattacaatcaattatatgtgtgacttacactataaaaacacgacccaattacatgagttatgaaaacggctactcatacaagtaa |
8656520 |
T |
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| Q |
118 |
ctgggttatggtggtttggcagggtcggtctcgggtggggtttttcagaacagcgaaattcgattccgaccgatccatacccattagtgtaaacaccaaa |
217 |
Q |
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| T |
8656521 |
ctgggttatggtggtttggcagggtcggtctcgggtggggtttttcagaacagcgaaatccgattccgaccgacccatacccattagtgtaaacaccaaa |
8656620 |
T |
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| Q |
218 |
gtcaaactcacttcatacttagatccaacccaaaattgaagcacaattttatcatagttcagacat-tataagcttaatttagagagaaacctaaatttg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |
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| T |
8656621 |
gtcaaactcacttcatacttagatccaacccaaaattgaagcacaattttaacatagttcagatatatataagcttaatttagagagaaacctaaaattt |
8656720 |
T |
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| Q |
317 |
ttctccattgtgttgtctgt |
336 |
Q |
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| T |
8656721 |
ttctccattgtgttgtctgt |
8656740 |
T |
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