View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15752_low_6 (Length: 246)
Name: NF15752_low_6
Description: NF15752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15752_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 7153368 - 7153588
Alignment:
| Q |
16 |
atacattctatttcttggataaatacttgtagaattagtaataagcagagatttatgacttatattgactctagt----acaatacaaccaaacacaaag |
111 |
Q |
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| T |
7153368 |
atacattctatttcttggataaatacttgtagagttagtaataagcagagatttatgacttatattgactatagtttatacaatacaaccaaacacaaag |
7153467 |
T |
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| Q |
112 |
caaccatatagctctcataacaccttcaacaaa----atctaacatttcaattttctgaagatgagatctatgaccactttatattattctaattaaaaa |
207 |
Q |
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| T |
7153468 |
caaccatatagctctcataacaccttcaacaaattaaatctaacatttcaattttctgaagatgagatctatgaccactttatattattctaattaaaaa |
7153567 |
T |
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| Q |
208 |
gcaaacacacatgtttcttat |
228 |
Q |
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| T |
7153568 |
gcaaacacacatgtttcttat |
7153588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 7159548 - 7159659
Alignment:
| Q |
90 |
tacaatacaaccaaacacaaagcaaccatatagctctcataacaccttcaacaaaatct---aacatttcaattttctgaagatgagatctatgaccact |
186 |
Q |
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||||| ||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| | ||||| |||||||| |
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| T |
7159548 |
tacaagacaaccaaacacaaagcgatcata--gctctcataacaccttcaacaaaatctaagaacatttgaatttgatgaaggttagatccatgaccacc |
7159645 |
T |
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| Q |
187 |
ttatattattctaa |
200 |
Q |
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| T |
7159646 |
tcatattattctaa |
7159659 |
T |
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