View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15753_high_1 (Length: 632)

Name: NF15753_high_1
Description: NF15753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15753_high_1
NF15753_high_1
[»] chr1 (1 HSPs)
chr1 (21-632)||(3745173-3745785)


Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 21 - 632
Target Start/End: Original strand, 3745173 - 3745785
Alignment:
Q  21 aaacccatcaacctgaaatccattctcacactttttcttgattttcttctactttgatgaaaaatgatatttttcaatgttagagatgtggtgaattgga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3745173 aaacccatcaacctgaaatccattctcacactttttcttgattttcttctactttgatgaaaaatgatatttttcaatgttagagatgtggtgaattgga 3745272  T
Q  121 gtatttaaacggtgagaatgaagnnnnnnnctagaaggttcaggagaaatggaacggaaacacagtagggacatttgaaagttctagtagtttcgagttt 220  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3745273 gtatttaaacggtgagaatgaagaaaaaaactagaaggttcaggagaaatggaacggaaacacagtagggacatttgaaagttctagtagtttcgagttt 3745372  T
Q  221 agaagaacacgtggttctcttaacattccttatttagagttctttctatttctttcttgtaccttctagagtcgtttgacttttggtcaatcctctctgg 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3745373 agaagaacacgtggttctcttaacattccttatttagagttctttctatttctttcttgtaccttctagagtcgtttgacttttggtcaatcctctctgg 3745472  T
Q  321 ctctctcgcactcccacatgta-tttatttattttagatagaaaaaatcatcataatcatggacacactccctctgttacatgttccattggataaaaag 419  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3745473 ctctctcgcactcccacatgtatttttttttttttagatagaaaaaatcatcataatcatggacacactccctctgttacatgttccattggataaaaag 3745572  T
Q  420 gatgtgtatgctctaaatctgtgtcggtatccacttgacgggtatttagcagattttaaaaatctacgagtaacannnnnnnaatagaaaaaattgcaat 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||||||||||||    
T  3745573 gatgtgtatgctctaaatctgtgtcggtatccacttgacgggtatttagcagatttcaaaaatctacgagtaacatttttttaatagaaaaaattgcaat 3745672  T
Q  520 taagtagaatattttcatcctgtcttttgacgacacaagaaaattatacacagaaattaatacagtgcactcttacaccaatcaataaataaaatacatc 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3745673 taagtagaatattttcatcctgtcttttgacgacacaagaaaattatacacagaaattaatacagtgcactcttacaccaatcaattaataaaatacatc 3745772  T
Q  620 acacattcatttc 632  Q
    |||||||||||||    
T  3745773 acacattcatttc 3745785  T

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