View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15753_high_10 (Length: 325)
Name: NF15753_high_10
Description: NF15753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15753_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 34760508 - 34760220
Alignment:
| Q |
19 |
aggatcgaacacgtgacccaacatatcaaatatctctgcagtcttttaccactgtacatgtaggacaatcgctgttcttaattggtacatagtttgttac |
118 |
Q |
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| T |
34760508 |
aggatcgaacacgtgacccaacatatcaaatatctctgcagtcttttaccactgtacttgtaggacaaccgccgttcttaattggtacatagtttgttac |
34760409 |
T |
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| Q |
119 |
ttttgcttataattttgagtaaaaagagtataatagatgggttaataatcagtctgtgaattgtgctgaaaagcaaccatagtcctactcacggaaatac |
218 |
Q |
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| T |
34760408 |
ttttgcttataatt--gagtaaaaagagtataatagatgggttaataatcagtctgtgaattgtgctgaaaagcaaccatagtcctactcacggatatat |
34760311 |
T |
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| Q |
219 |
cagaatgaacaaatcgggcacattaacgagtttctatatttggttaagaaaattgggaagatttatattagtttgtgtcccttattgttga |
309 |
Q |
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| T |
34760310 |
cagaatgaacaaatcgggcacattaacgagtttctatatttggttaagaaaattgggaagatttatattagtttgtgtcccttattgttga |
34760220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 116 - 309
Target Start/End: Complemental strand, 34747954 - 34747763
Alignment:
| Q |
116 |
tacttttgcttataattttgagtaaaaagagtataatagatgggttaataatcagtctgtgaattgtgctgaaaagcaaccatagtcctactcacggaaa |
215 |
Q |
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| T |
34747954 |
tacttgtgcttataatt--gagtaaaaagagtataatggatgggttaataatcagtctatgaattgcactgaaaagcaaccataatcctactcacggata |
34747857 |
T |
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| Q |
216 |
taccagaatgaacaaatcgggcacattaacgagtttctatatttggttaagaaaattgggaagatttatattagtttgtgtcccttattgttga |
309 |
Q |
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| T |
34747856 |
tattagaatgaactaaacgggcacattaacgagtttctttattcagttaagcaaattgggaagatttatattagtttttgttcctaattgttga |
34747763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 34752451 - 34752362
Alignment:
| Q |
220 |
agaatgaacaaatcgggcacattaacgagtttctatatttggttaagaaaattgggaagatttatattagtttgtgtcccttattgttga |
309 |
Q |
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||||||||| ||| ||||||||||| | |||||||| |||||||||| | |||| |||||||| |||| ||| ||| ||| |||||||| |
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| T |
34752451 |
agaatgaactaattgggcacattaatgggtttctatttttggttaagcagattgagaagatttgcattaatttttgttcctaattgttga |
34752362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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