View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15753_high_6 (Length: 397)
Name: NF15753_high_6
Description: NF15753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15753_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 55163359 - 55163720
Alignment:
| Q |
17 |
cacagacaatgatttcaacaacttaccatcaggtgatgtggtggataaacttcttcaagagtggcaaactagttctgtacaaggtatcacagatgagcat |
116 |
Q |
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| T |
55163359 |
cacagacaatgatttcaacaacttaccatcaggtgatgtggtggataaacttcttcaagagtggcaaactagttctgtacaaggtatcacagatgagcat |
55163458 |
T |
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| Q |
117 |
ggttcaaatagcttttatggattcttaggagaatatagaattagggtcgagtatcgcaacaagactatagattcaactttctctctatgtagaggtgaag |
216 |
Q |
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| T |
55163459 |
ggttcacatagcttttatggattcttaggagaatatagaattagggtcgagtatcgcaacaagactataaattcaactttctctctatgtagaggtgaag |
55163558 |
T |
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| Q |
217 |
aaactaaacatgtccctgtgacactgtgacttaatttttatttatgaacctccttaacttttcactagaacctttctttgtaaaccctaccagtccgagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
55163559 |
aaactaaacatgtccctgtgacactgtgacttaatttttatttatgaacctccttaac--ttcactagaacctttctttgtaaaccctaccagtccgagt |
55163656 |
T |
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| Q |
317 |
tctcagggagaattgtaaccactctgattggatttacatgagcagttaaataaaggtaaatcat |
380 |
Q |
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| T |
55163657 |
tctcagggagaattgtaaccactctgattggatttacatgagcagttaaataaaggtaaatcat |
55163720 |
T |
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