View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15753_low_18 (Length: 226)
Name: NF15753_low_18
Description: NF15753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15753_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 31694331 - 31694510
Alignment:
| Q |
22 |
aagttcctcactatcacactctgcacctctacttttccccattctgcagaaataaaactctcttataattcacatgttctcatttcaacttaaattctta |
121 |
Q |
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| T |
31694331 |
aagttcctcactatcacactctgcacctctactcttccccattctgcagaaacaaaactctcttataattcacatgttctcatttcagcttaaattctta |
31694430 |
T |
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| Q |
122 |
acctttgtgttaaaaataacataaccacatcaagttttacacaacaaatcccactgtgttcatagattcaaaacaatcaaac |
203 |
Q |
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| T |
31694431 |
acctt--tgttaaaaataacataaccacatcaagttttacacaacaaatcccactgtgttcatatattcaaaacaatcaaac |
31694510 |
T |
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Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 45534197 - 45534376
Alignment:
| Q |
22 |
aagttcctcactatcacactctgcacctctacttttccccattctgcagaaataaaactctcttataattcacatgttctcatttcaacttaaattctta |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45534197 |
aagttcctcactatcacactctgcacctctacttttccccattctgcagaaacaaaactctcttataattcacatgttctcatttctacttaaattctta |
45534296 |
T |
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| Q |
122 |
acctttgtgttaaaaataacataaccacatcaagttttacacaacaaatcccactgtgttcatagattcaaaacaatcaaac |
203 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45534297 |
acctt--tgttaaaaataacataaccgcatcaagttttacacaacaaatcccattgtgttcatagattcaaaacaatcaaac |
45534376 |
T |
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