View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15753_low_2 (Length: 578)

Name: NF15753_low_2
Description: NF15753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15753_low_2
NF15753_low_2
[»] chr3 (8 HSPs)
chr3 (125-565)||(23150149-23150589)
chr3 (305-565)||(23141539-23141799)
chr3 (305-544)||(23018546-23018785)
chr3 (305-553)||(23025554-23025799)
chr3 (427-544)||(23040337-23040454)
chr3 (428-544)||(23147212-23147328)
chr3 (427-544)||(23037460-23037577)
chr3 (497-543)||(22987478-22987524)
[»] scaffold0554 (1 HSPs)
scaffold0554 (305-544)||(4987-5226)
[»] chr6 (2 HSPs)
chr6 (427-544)||(21781227-21781344)
chr6 (497-543)||(14307656-14307702)
[»] chr8 (1 HSPs)
chr8 (497-543)||(23611543-23611589)


Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 125 - 565
Target Start/End: Complemental strand, 23150589 - 23150149
Alignment:
Q  125 tccactagattttaaaaaatgattgaatggattggattcaatcatgtttagtaaatggatggattgaattggattgatttttaaatgggtggattcaatt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23150589 tccactagattttaaaaaatgattgaatggattggattcaatcatgtttagtaaatggatggattgaattggattgatttttaaatgggtggattcaatt 23150490  T
Q  225 acctccacaaataatgtttgagttttgatggtatgtaaacagaaactggttggacatgactcataatattgctatactggttttctatggctctagaagt 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23150489 acctccacaaataatgtttgagttttgatggtatgtaaacagaaactggttggacatgactcataatattgctatactggttttctatggctctagaagt 23150390  T
Q  325 catctacctgtcttatcttttctcctttgttctcttagcccttgttttacaaaaagtaggaaagaagctcaagaaaacagattcaacttataacctccct 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23150389 catctacctgtcttatcttttctcctttgttctcttagcccttgttttacaaaaagtaggaaagaagctcaagaaaacagattcaacttataacctccct 23150290  T
Q  425 aaagggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactcagagatttggctagaaaatatggaccct 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23150289 aaagggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactaagagatttggctagaaaatatggaccct 23150190  T
Q  525 tgatgcatcttcaacttggacagatttccatggttgtaatt 565  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23150189 tgatgcatcttcaacttggacagatttccatggttgtaatt 23150149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 305 - 565
Target Start/End: Complemental strand, 23141799 - 23141539
Alignment:
Q  305 ttttctatggctctagaagtcatctacctgtcttatcttttctcctttgttctcttagcccttgttttacaaaaagtaggaaagaagctcaagaaaacag 404  Q
    ||||| |||||||||  |||||||||| |||| ||| ||||||||||||| |||||||||||| || |||||||||||| ||||||| ||||||| ||||    
T  23141799 ttttccatggctctactagtcatctacttgtcatatattttctcctttgtcctcttagcccttattctacaaaaagtagaaaagaagttcaagaacacag 23141700  T
Q  405 attcaacttataacctccctaaagggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactcagagattt 504  Q
    | ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  23141699 actcaacttttaacctccctaaagggcctataaagctacctattataggaaatttacacaatctgttaagttctcaaccacataaaaaactaagagattt 23141600  T
Q  505 ggctagaaaatatggacccttgatgcatcttcaacttggacagatttccatggttgtaatt 565  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  23141599 ggctagaaaatatggacccttgatgcatcttcaacttggagagatttccatgattgtaatt 23141539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 305 - 544
Target Start/End: Complemental strand, 23018785 - 23018546
Alignment:
Q  305 ttttctatggctctagaagtcatctacctgtcttatcttttctcctttgttctcttagcccttgttttacaaaaagtaggaaagaagctcaagaaaacag 404  Q
    ||||| |||||||||  || | ||||| |||| ||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||    
T  23018785 ttttccatggctctactagccctctacttgtcatatcttttctcctttgtcctcttagccattgttgtacaaaaagtaggaaagaagctcaaaaaaacag 23018686  T
Q  405 attcaacttataacctccctaaagggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactcagagattt 504  Q
    | ||||||| ||||||||| |||||||||| ||||||||| ||||| |||||| ||||||||||  |||| |||||||| |||  |||| | || || ||    
T  23018685 actcaacttttaacctcccaaaagggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgactt 23018586  T
Q  505 ggctagaaaatatggacccttgatgcatcttcaacttgga 544  Q
    ||| | ||||||||||||||||||||||||||||||||||    
T  23018585 ggccaaaaaatatggacccttgatgcatcttcaacttgga 23018546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 305 - 553
Target Start/End: Complemental strand, 23025799 - 23025554
Alignment:
Q  305 ttttctatggctctagaagtcatctacctgtcttatcttttctcctttgttctcttagcccttgttttacaaaaagtaggaaagaagctcaagaaaacag 404  Q
    ||||| |||||| ||  |||| ||||| |||| ||| |||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||    
T  23025799 ttttccatggctttactagtcctctacttgtcatatattttcttctttattctcttagccattgttgtacaaaaagtaggaaagaagctcaagaacacag 23025700  T
Q  405 attcaacttataacctccctaaagggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactcagagattt 504  Q
    |  |   || |||||||||||| || |||| ||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||  |||| ||    
T  23025699 accc---ttttaacctccctaatggacctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacgagactt 23025603  T
Q  505 ggctagaaaatatggacccttgatgcatcttcaacttggacagatttcc 553  Q
    ||| ||| |||||||||||||||||||||| ||||||||| ||||||||    
T  23025602 ggcaagagaatatggacccttgatgcatctccaacttggagagatttcc 23025554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 427 - 544
Target Start/End: Complemental strand, 23040454 - 23040337
Alignment:
Q  427 agggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactcagagatttggctagaaaatatggacccttg 526  Q
    ||||||||||||| |||| ||||| |||||| |||||||||||||||  |||||||| |||| |||||| ||||| ||||| | ||||||||||||| ||    
T  23040454 agggcctataaagttacctattataggaaatatacacaatctgttaacctctcaaccccatcgaaaactaagagacttggccaaaaaatatggacccctg 23040355  T
Q  527 atgcatcttcaacttgga 544  Q
    ||||||||||||||||||    
T  23040354 atgcatcttcaacttgga 23040337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 428 - 544
Target Start/End: Complemental strand, 23147328 - 23147212
Alignment:
Q  428 gggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactcagagatttggctagaaaatatggacccttga 527  Q
    ||||||| |||| |||||||||| |||||| |||||||||||||||| |||||||| ||||||||| | ||||| ||||| | ||||||||||||  |||    
T  23147328 gggcctagaaagttaccaattataggaaatatacacaatctgttaagctctcaaccccatcaaaaattaagagacttggcgaaaaaatatggaccagtga 23147229  T
Q  528 tgcatcttcaacttgga 544  Q
    |||||||||||||||||    
T  23147228 tgcatcttcaacttgga 23147212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 427 - 544
Target Start/End: Complemental strand, 23037577 - 23037460
Alignment:
Q  427 agggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactcagagatttggctagaaaatatggacccttg 526  Q
    ||||||||||||| |||| ||||| |||||| |||||||||||||||| |||||||| |||   ||| | ||||| ||||| | ||||||||||||  ||    
T  23037577 agggcctataaagttacctattataggaaatatacacaatctgttaagctctcaaccccataggaaattaagagacttggccaaaaaatatggaccagtg 23037478  T
Q  527 atgcatcttcaacttgga 544  Q
    ||||||||||||||||||    
T  23037477 atgcatcttcaacttgga 23037460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 543
Target Start/End: Complemental strand, 22987524 - 22987478
Alignment:
Q  497 agagatttggctagaaaatatggacccttgatgcatcttcaacttgg 543  Q
    |||||||| || | |||||||||||||||||||||||| ||||||||    
T  22987524 agagatttagcaaaaaaatatggacccttgatgcatctacaacttgg 22987478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 305 - 544
Target Start/End: Original strand, 4987 - 5226
Alignment:
Q  305 ttttctatggctctagaagtcatctacctgtc-ttatcttttctcctttgttctcttagcccttgttttacaaaaagtaggaaagaagctcaagaaaaca 403  Q
    ||||| ||||||||| ||||| ||||| |||| |||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  4987 ttttccatggctctacaagtcctctacgtgtcattat-ttttctcctttgttctcttagcccttcttgtacaaaaagtaggaaagaagctcaagaaaaca 5085  T
Q  404 gattcaacttataacctccctaaagggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactcagagatt 503  Q
    || ||||| | |||||| || |||||||||| ||||||||| ||||| |||||| | |||||| || |||| |||||||| |||   ||| | || || |    
T  5086 gactcaacatttaaccttccaaaagggcctagaaagctacctattataggaaatattcacaatttgctaagctctcaaccccataggaaattaagtgact 5185  T
Q  504 tggctagaaaatatggacccttgatgcatcttcaacttgga 544  Q
    |||| | ||||||||||||| ||||||||||||||||||||    
T  5186 tggccaaaaaatatggacccgtgatgcatcttcaacttgga 5226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 427 - 544
Target Start/End: Complemental strand, 21781344 - 21781227
Alignment:
Q  427 agggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactcagagatttggctagaaaatatggacccttg 526  Q
    |||||||| |||| |||| ||||| |||||| |||||||||||||||| ||||||||  ||| || | | ||||| ||||| | ||||||||||||  ||    
T  21781344 agggcctagaaagttacctattataggaaatatacacaatctgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggaccagtg 21781245  T
Q  527 atgcatcttcaacttgga 544  Q
    ||||||||||||||||||    
T  21781244 atgcatcttcaacttgga 21781227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 543
Target Start/End: Complemental strand, 14307702 - 14307656
Alignment:
Q  497 agagatttggctagaaaatatggacccttgatgcatcttcaacttgg 543  Q
    |||||||| || | |||||||||||||||||||||||||||||||||    
T  14307702 agagatttagccaaaaaatatggacccttgatgcatcttcaacttgg 14307656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 543
Target Start/End: Complemental strand, 23611589 - 23611543
Alignment:
Q  497 agagatttggctagaaaatatggacccttgatgcatcttcaacttgg 543  Q
    |||||||| || | |||||||||||||||||||||||||||||||||    
T  23611589 agagatttagccaaaaaatatggacccttgatgcatcttcaacttgg 23611543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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