View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15753_low_4 (Length: 478)
Name: NF15753_low_4
Description: NF15753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15753_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 588158 - 587701
Alignment:
| Q |
1 |
cttgaagacgaacacactctatagttccaagcaacatcatcattccaaccatagtaagtttaataaagtgtcggtgttaattgaccactactaataaagg |
100 |
Q |
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| T |
588158 |
cttgaagacgaacacactctataattccaagcagcatcatcattccaaccatagtaagtttaataaagtgtcagtgttaattgaccactaccaataaagg |
588059 |
T |
|
| Q |
101 |
gtcactcaaaaatccaaaacagacaaataaactggtaaagagaatacaaaataatacactgatatatagcatcccaaagtgaagatgaataa-gttcaat |
199 |
Q |
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| T |
588058 |
gtcactcaaaaatccaaaacagacaaataaactggtaaagagaatacaaaataatacactgatatatagcatcccacagtgaagatgaataaagttcaat |
587959 |
T |
|
| Q |
200 |
attttccataaacaacatgcaggtcttccaaataataagaacttttgggttctaatttccacataactcagaaccagaatacttgtgttttgaaatggtg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
587958 |
attttccataaacaacatgcaggtcttccaaataataagaacgtttgggttctaatttccacataacccagaaccagaatacttgtgttttgaattggtg |
587859 |
T |
|
| Q |
300 |
aacagctgtttgtaaaaaatttgtgaactcagcagtgtgcatgcaacgtcacttgctcaattacctgccagagatatatctactacacttacacctatca |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| |
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| T |
587858 |
aacagctgtttgtaaaaaatttgtgaactcagcagtgtgcatgcaacgtcacttgctcaattacctgccagcgttatat---ctacacttacacctatca |
587762 |
T |
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| Q |
400 |
ttagtaatttatttaccatagcatcctagtgcacagttaagtcatacaaggacgctattaa |
460 |
Q |
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| T |
587761 |
ttagtaatttatttaccatagcatcctagtgcacagttaagtcatacaaggacgctattaa |
587701 |
T |
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