View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15754_low_3 (Length: 299)
Name: NF15754_low_3
Description: NF15754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15754_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 52832599 - 52832329
Alignment:
| Q |
11 |
cacagaaacagaggaaactccgaattttattgtccactttccttacattgttaaacaaaggtcacatgtaacatcgccacacttgttacttcttttccct |
110 |
Q |
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| T |
52832599 |
cacagaaacagaggaaactccgaattttattgtccactttccctacattgttaaacaaaggtcgcatgtaacaccaccacccttgttacttcttttccct |
52832500 |
T |
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| Q |
111 |
ttttgcacccatttatgattgattatacacccttctcttgtagcagaaattaaagaacccaactcctccacattgtagtaacatacattttcggaatggc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52832499 |
ttttgcacccatttatgattgattatacacccttctcttgtagcagaaattaaagaacccaactcctccacattgtagtaacatacattttcggaatggc |
52832400 |
T |
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| Q |
211 |
gaggaaaaattattcaccatcttcatctgcattgcgttatgttcaacctcgttattacgcaaaaagaccca |
281 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52832399 |
gaggaaaaattattcatcatcttcatctgcattgcgttatgttcaacctcgttattacgcaaaaagaccca |
52832329 |
T |
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