View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15754_low_4 (Length: 247)
Name: NF15754_low_4
Description: NF15754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15754_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 35409841 - 35409602
Alignment:
| Q |
1 |
ctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaa |
100 |
Q |
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| T |
35409841 |
ctccttgcttaccaccattatctggactgtatcagcgcaacatgctgtcttgaacttcagtcaatacccctatggtggatatgttccaatccggccacaa |
35409742 |
T |
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| Q |
101 |
ttaatgcgaaaattaattcctaatgaggaggttcctgatcacgcggcctttgtcaaggatccgcagagatactttctatcatcactgccaagcttatttc |
200 |
Q |
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| T |
35409741 |
ttaatgcgaaaattaattcctaatgaggaggttcctgatcacgcggcctttgtcaaggatccgcagagatactttctatcatcactgccaagcttatttc |
35409642 |
T |
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| Q |
201 |
aggcaacaaagttcatggctgtgattaacacaggttctgc |
240 |
Q |
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| T |
35409641 |
aggcaacaaagttcatggctgtgattaacataggttctgc |
35409602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 35408311 - 35408243
Alignment:
| Q |
169 |
atactttctatcatcactgccaagcttatttcaggcaacaaagttcatggctgtgattaacacaggttc |
237 |
Q |
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||||||||| |||||||||||||| ||||||||||| | || ||||||||||||||| |||| |||||| |
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| T |
35408311 |
atactttctgtcatcactgccaagtttatttcaggcgaaaaggttcatggctgtgatcaacataggttc |
35408243 |
T |
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